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htstream

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HTStream is a quality control and processing pipeline for High Throughput Sequencing data. The difference between HTStream and other tools is that HTStream uses a tab delimited fastq format that allows for streaming from application to application. This streaming creates some awesome efficiencies when processing HTS data and makes it fully interoperable with other standard Linux tools.

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::htstream

Usage Tracking

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About

Summary

HTStream is a quality control and processing pipeline for High Throughput Sequencing data. The difference between HTStream and other tools is that HTStream uses a tab delimited fastq format that allows for streaming from application to application. This streaming creates some awesome efficiencies when processing HTS data and makes it fully interoperable with other standard Linux tools.

Last Updated

Jan 15, 2025 at 05:51

License

Apache 2.0

Total Downloads

26.4K

Supported Platforms

linux-64
macOS-64
linux-aarch64
macOS-arm64