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perl-extutils-parsexs
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public |
Converts Perl XS code into C code.
|
2025-07-21 |
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gnparser
|
public |
GNparser normalises scientific names and extracts their semantic elements.
|
2025-07-21 |
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rdeval
|
public |
A general purpose, multithreaded read analysis and manipulation tool.
|
2025-07-21 |
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netmd
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public |
NetMD is a computational method for identifying consensus behavior across multiple molecular dynamics simulations.
|
2025-07-21 |
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bioconductor-hmmcopy
|
public |
Copy number prediction with correction for GC and mappability bias for HTS data
|
2025-07-21 |
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jbrowse2
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public |
The JBrowse 2 Genome Browser
|
2025-07-21 |
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grz-check
|
public |
grz-check is a tool for validating incoming files of Modellvorhaben ยง64e submissions to Genomrechenzentren (GRZ) in Germany.
|
2025-07-21 |
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ensemblcov
|
public |
Parallel threaded variant linker.
|
2025-07-21 |
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hmftools-neo
|
public |
Identification of neoepitope and calculation of allele specific neoepitope binding and presentation likelihood.
|
2025-07-21 |
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hmftools-sage
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public |
SAGE is a somatic SNV, MNV and small INDEL caller optimised 100x tumor / 40x normal coverage, but has a flexible set of filters that can be adapted to lower or higher depth coverage.
|
2025-07-21 |
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hmftools-linx
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public |
LINX is an annotation, interpretation and visualisation tool for structural variants.
|
2025-07-21 |
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hmftools-purple
|
public |
PURPLE is a purity ploidy estimator for tumor samples.
|
2025-07-21 |
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hmftools-bam-tools
|
public |
Rapidly process BAMs for various tasks.
|
2025-07-21 |
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hmftools-amber
|
public |
Generates a tumor BAF file for use in PURPLE.
|
2025-07-21 |
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piscem-infer
|
public |
piscem-infer is a flexible tool to perform target quantification from bulk-sequencing data
|
2025-07-20 |
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pydustmasker
|
public |
Python library for identification and masking of low-complexity regions in nucleotide sequences.
|
2025-07-19 |
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bygul
|
public |
Bygul is an amplicon read simulating tool that can generate different sample read proportions based on user input.
|
2025-07-18 |
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scispacy
|
public |
A full SpaCy pipeline and models for scientific/biomedical documents.
|
2025-07-18 |
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pyfastx
|
public |
pyfastx is a python module for fast random
access to sequences from plain and gzipped
FASTA/Q file
|
2025-07-18 |
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pyrodigal
|
public |
Python bindings to Prodigal, an ORF finder for microbial sequences.
|
2025-07-18 |
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pyhmmer
|
public |
Cython bindings and Python interface to HMMER3.
|
2025-07-18 |
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hal2vg
|
public |
A tool for converting from hal to vg format, as well as other tools generally useful for cactus.
|
2025-07-18 |
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gb_taxonomy_tools
|
public |
These are four simple utilities which perform certain manipulations and visualization tasks on GenBank taxonomic information.
|
2025-07-18 |
|
vembrane
|
public |
Filter VCF/BCF files with Python expressions.
|
2025-07-18 |
|
d4binding
|
public |
The C/C++ binding for the D4 file format.
|
2025-07-18 |
