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bioconda / packages

Package Name Access Summary Updated
biocode public Bioinformatics code libraries and scripts. 2025-07-22
rsidx public Library for indexing VCF files for random access searches by rsID. 2025-07-22
alen public Simple terminal sequence alignment viewer 2025-07-22
crocodeel public CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data 2025-07-22
agat public Another Gff Analysis Toolkit (AGAT). Suite of tools to handle gene annotations in any GTF/GFF format. 2025-07-22
svision-pro public Neural-network-based long-read SV caller. 2025-07-22
gpsw public GPSW is a tool for analysing Global Protein Stability Profiling data. 2025-07-22
bigwig-nim public Command-line querying+conversion of bigwigs 2025-07-22
goalign public goalign is a set of command line tools to manipulate multiple alignments 2025-07-22
r-tidyheatmap public This is a tidy implementation for heatmap. At the moment it is based on the (great) package 'ComplexHeatmap'. The goal of this package is to interface a tidy data frame with this powerful tool. Some of the advantages are: Row and/or columns colour annotations are easy to integrate just specifying one parameter (column names). Custom grouping of rows is easy to specify providing a grouped tbl. For example: df %>% group_by(...). Labels size adjusted by row and column total number. Default use of Brewer and Viridis palettes. 2025-07-22
vcfbub public Popping bubbles in vg deconstruct VCFs 2025-07-22
parasail-python public Python bindings for the parasail C library containing implementations of pairwise sequence alignment algorithms. 2025-07-22
hmftools-lilac public LILAC is a WGS tool to determine HLA Class I types. 2025-07-22
pantax public Strain-level metagenomic profiling using pangenome graphs with PanTax 2025-07-22
pilea public Pilea: profiling bacterial growth dynamics from metagenomes with sketching 2025-07-22
iseq public iSeq is a Bash script that allows you to download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases. 2025-07-22
svtopo public Complex structural variant visualization for HiFi sequencing data: extraction tool 2025-07-22
nextpolish public Fast and accurately polish the genome generated by long reads 2025-07-22
r-bpcells public Efficient operations for single cell ATAC-seq fragments and RNA counts matrices. Interoperable with standard file formats, and introduces efficient bit-packed formats that allow large storage savings and increased read speeds. 2025-07-22
svtopovz public Complex structural variant visualization for HiFi sequencing data: plotting tool. 2025-07-22
cooler public Sparse binary format for genomic interaction matrices. 2025-07-22
nextpolish2 public Repeat-aware polishing genomes assembled using HiFi long reads. 2025-07-21
bbmap public BBMap is a short read aligner, as well as various other bioinformatic tools. 2025-07-21
bio-unicorn public A tool for computing statistics on short read alignments. 2025-07-21
metilene public Fast and sensitive detection of differential DNA methylation 2025-07-21

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