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perl-perlio-utf8_strict
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public |
Fast and correct UTF-8 IO.
|
2025-07-24 |
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genefuse
|
public |
Gene fusion detection and visualization
|
2025-07-24 |
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bellmans-gapc
|
public |
A language and compiler for algebraic dynamic programming.
|
2025-07-24 |
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plasann
|
public |
A tool for plasmid annotation and visualization.
|
2025-07-24 |
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pysam
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public |
Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
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2025-07-24 |
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moments
|
public |
Evolutionary inference using SFS and LD statistics.
|
2025-07-24 |
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star
|
public |
An RNA-seq read aligner.
|
2025-07-24 |
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cas-offinder
|
public |
Cas-OFFinder is OpenCL based, ultrafast and versatile program that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases (RGEN).
|
2025-07-24 |
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hmftools-wisp
|
public |
WISP performs tumor fraction estimate for longitudinal samples
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2025-07-24 |
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fpocketr
|
public |
CLI tool to find, characterize, and visualize RNA-ligand binding pockets.
|
2025-07-24 |
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gecko
|
public |
A pairwise genome comparison software for the detection of High-scoring Segment Pairs
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2025-07-24 |
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gctb
|
public |
GCTB (Genome-wide Complex Trait Bayesian ) is a software tool that comprises a family of Bayesian linear mixed models for complex trait analyses using genome-wide SNPs.
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2025-07-24 |
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minialign
|
public |
Fast and accurate alignment tool for PacBio and Nanopore long reads.
|
2025-07-24 |
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minia
|
public |
Minia is a short-read assembler based on a de Bruijn graph, capable of assembling a human genome on a desktop computer in a day.
|
2025-07-23 |
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hmftools-chord
|
public |
Predict HRD using somatic mutations contexts
|
2025-07-23 |
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pcdl
|
public |
physicell data loader (pcdl) provides a platform independent, python3 based, pip installable interface to transform output, generated with the PhysiCell agent based modeling framework, into standard formats.
|
2025-07-23 |
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ndex2
|
public |
Nice CX Python includes a client and a data model.
|
2025-07-23 |
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pegas
|
public |
PeGAS is a Snakemake pipeline for genome analysis
|
2025-07-23 |
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snakemake-executor-plugin-kubernetes
|
public |
A snakemake executor plugin for submission of jobs to Kubernetes.
|
2025-07-23 |
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kma
|
public |
KMA is a mapping method designed to map raw reads directly against redundant databases, in an ultra-fast manner using seed and extend.
|
2025-07-23 |
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cleanifier
|
public |
A fast lightweight tool to remove contamination using k-mers.
|
2025-07-23 |
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craq
|
public |
Pinpoint assembly errors for genomic assessing and correcting.
|
2025-07-23 |
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orthanq
|
public |
Uncertainty aware HLA typing and general haplotype quantification.
|
2025-07-23 |
|
ervmancer
|
public |
Quantifies HERV short read RNA sequencing expression data
|
2025-07-23 |
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sylph-tax
|
public |
Integrating taxonomic information into the sylph metagenome profiler.
|
2025-07-23 |
