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dajin2
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public |
One-step genotyping tools for targeted long-read sequencing.
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2025-07-18 |
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metanovo
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public |
Produce targeted databases for mass spectrometry analysis.
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2025-07-18 |
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ccp4srs
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public |
CCP4 Storage, Retrieval and Search framework for small-molecule data
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2025-07-18 |
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pupmapper
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public |
Tool & python package for calculating genome wide pileup mappability.
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2025-07-18 |
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breakinator
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public |
Detection of foldback and chimeric read artifacts in PAF files
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2025-07-18 |
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r-erah
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public |
Automated compound deconvolution, alignment across samples, and identification of metabolites by spectral library matching in Gas Chromatography - Mass spectrometry (GC-MS) untargeted metabolomics.
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2025-07-18 |
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vcf-validator
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public |
EBI EVA - Validation tool for VCF file format compliance
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2025-07-18 |
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mosdepth
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public |
Fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing.
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2025-07-18 |
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methbat
|
public |
A battery of methylation tools for PacBio HiFi reads
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2025-07-17 |
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zdb
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public |
zDB is both a bacterial comparative genomics pipeline and a tool to visualize the results
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2025-07-17 |
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bactopia-py
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public |
A Python package for working with Bactopia.
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2025-07-17 |
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cenote-taker3
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public |
Cenote-Taker 3: Discover and annotate the virome.
|
2025-07-17 |
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bioconductor-lpsymphony
|
public |
Symphony integer linear programming solver in R
|
2025-07-17 |
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bioconductor-rbowtie2
|
public |
An R Wrapper for Bowtie2 and AdapterRemoval
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2025-07-17 |
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minisplice
|
public |
minisplice is a command-line tool to estimate the odds-ratio score of canonical donor (GT) and acceptor (AG) splice sites. It is intended to be used with miniprot or minimap2 for improving alignment accuracy especially for distant homologs..
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2025-07-17 |
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minigraph
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public |
Proof-of-concept seq-to-graph mapper and graph generator
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2025-07-17 |
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cdskit
|
public |
A toolkit for processing protein-coding sequences (CDS).
|
2025-07-17 |
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isorefiner
|
public |
A refinement tool to identify exon-intron structures of transcript (RNA) isoforms using long reads
|
2025-07-17 |
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gcen
|
public |
GCEN: an easy-to-use toolkit for Gene Co-Expression Network analysis and lncRNAs annotation
|
2025-07-17 |
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dna-nn
|
public |
Model and predict short DNA sequence features with neural networks.
|
2025-07-17 |
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mgikit
|
public |
mgikit is a collection of tools used to demultiplex fastq files and generate demultiplexing and quality reports.
|
2025-07-17 |
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prodigal
|
public |
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial and archaeal) gene finding program
|
2025-07-17 |
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perl-experimental
|
public |
Experimental features made easy
|
2025-07-17 |
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phlame
|
public |
Novelty-aware intraspecies profiling of metagenome samples.
|
2025-07-17 |
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coreprofiler
|
public |
CoreProfiler, a robust and integrable cgMLST software.
|
2025-07-16 |
