mgikit
|
public |
mgikit is a collection of tools used to demultiplex fastq files and generate demultiplexing and quality reports.
|
2025-07-17 |
prodigal
|
public |
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial and archaeal) gene finding program
|
2025-07-17 |
perl-experimental
|
public |
Experimental features made easy
|
2025-07-17 |
phlame
|
public |
Novelty-aware intraspecies profiling of metagenome samples.
|
2025-07-17 |
coreprofiler
|
public |
CoreProfiler, a robust and integrable cgMLST software.
|
2025-07-16 |
unetcoreograph
|
public |
UNetCoreograph - Automated segmentation of nuclei in 3D imaging data.
|
2025-07-16 |
mumemto
|
public |
Finding maximal unique matches across pangenomes.
|
2025-07-16 |
transdecoder
|
public |
TransDecoder identifies candidate coding regions within transcript sequences, such as those generated by de novo RNA-Seq transcript assembly using Trinity, or constructed based on RNA-Seq alignments to the genome using Tophat and Cufflinks.
|
2025-07-16 |
pcaone
|
public |
PCAone - Principal Component Analysis All in One.
|
2025-07-16 |
spatialleiden
|
public |
Implementation of multiplex Leiden for analysis of spatial omics data.
|
2025-07-16 |
slclust
|
public |
A utility that performs single-linkage clustering with the option of applying a Jaccard similarity coefficient to break weakly bound clusters into distinct clusters.
|
2025-07-16 |
crossfilt
|
public |
Tools to filter reads causing alignment bias in cross-species genomic comparisons.
|
2025-07-16 |
seabreeze-genomics
|
public |
Analyzing Structural Variation Between Bacterial Genome Assemblies.
|
2025-07-16 |
tn93
|
public |
This is a simple program meant to compute pairwise distances between aligned nucleotide sequences in sequential FASTA format using the Tamura Nei 93 distance.
|
2025-07-16 |
star-fusion
|
public |
STAR-Fusion fusion variant caller. All dependencies required to run FusionInspector and FusionAnnotator are included.
|
2025-07-16 |
minimod
|
public |
A bioinformatics tool for viewing and calculating base modification frequencies from BAM files
|
2025-07-16 |
cressent
|
public |
A comprehensive toolkit for ssDNA virus analysis
|
2025-07-16 |
atlas
|
public |
ATLAS: Analysis Tools for Ancient and Low-depth Samples
|
2025-07-16 |
methylartist
|
public |
Tools for parsing and plotting nanopore methylation data.
|
2025-07-16 |
dbcan
|
public |
Standalone version of dbCAN annotation tool for automated CAZyme annotation.
|
2025-07-16 |
searchgui
|
public |
User-friendly graphical tool for using proteomics identification search engines.
|
2025-07-16 |
scoop
|
public |
Scalable COncurrent Operations in Python.
|
2025-07-16 |
ggcat
|
public |
Compacted and colored de Bruijn graph construction and querying.
|
2025-07-16 |
wheezy.template
|
public |
A lightweight template library.
|
2025-07-16 |
maxentpy
|
public |
maxentpy is a python wrapper for MaxEntScan to calculate splice site strength.
|
2025-07-16 |