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bioconda / packages

Package Name Access Summary Updated
mgikit public mgikit is a collection of tools used to demultiplex fastq files and generate demultiplexing and quality reports. 2025-07-17
prodigal public Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial and archaeal) gene finding program 2025-07-17
perl-experimental public Experimental features made easy 2025-07-17
phlame public Novelty-aware intraspecies profiling of metagenome samples. 2025-07-17
coreprofiler public CoreProfiler, a robust and integrable cgMLST software. 2025-07-16
unetcoreograph public UNetCoreograph - Automated segmentation of nuclei in 3D imaging data. 2025-07-16
mumemto public Finding maximal unique matches across pangenomes. 2025-07-16
transdecoder public TransDecoder identifies candidate coding regions within transcript sequences, such as those generated by de novo RNA-Seq transcript assembly using Trinity, or constructed based on RNA-Seq alignments to the genome using Tophat and Cufflinks. 2025-07-16
pcaone public PCAone - Principal Component Analysis All in One. 2025-07-16
spatialleiden public Implementation of multiplex Leiden for analysis of spatial omics data. 2025-07-16
slclust public A utility that performs single-linkage clustering with the option of applying a Jaccard similarity coefficient to break weakly bound clusters into distinct clusters. 2025-07-16
crossfilt public Tools to filter reads causing alignment bias in cross-species genomic comparisons. 2025-07-16
seabreeze-genomics public Analyzing Structural Variation Between Bacterial Genome Assemblies. 2025-07-16
tn93 public This is a simple program meant to compute pairwise distances between aligned nucleotide sequences in sequential FASTA format using the Tamura Nei 93 distance. 2025-07-16
star-fusion public STAR-Fusion fusion variant caller. All dependencies required to run FusionInspector and FusionAnnotator are included. 2025-07-16
minimod public A bioinformatics tool for viewing and calculating base modification frequencies from BAM files 2025-07-16
cressent public A comprehensive toolkit for ssDNA virus analysis 2025-07-16
atlas public ATLAS: Analysis Tools for Ancient and Low-depth Samples 2025-07-16
methylartist public Tools for parsing and plotting nanopore methylation data. 2025-07-16
dbcan public Standalone version of dbCAN annotation tool for automated CAZyme annotation. 2025-07-16
searchgui public User-friendly graphical tool for using proteomics identification search engines. 2025-07-16
scoop public Scalable COncurrent Operations in Python. 2025-07-16
ggcat public Compacted and colored de Bruijn graph construction and querying. 2025-07-16
wheezy.template public A lightweight template library. 2025-07-16
maxentpy public maxentpy is a python wrapper for MaxEntScan to calculate splice site strength. 2025-07-16

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