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splash
|
public |
Unsupervised and reference-free unifying framework to discover regulated sequence variation through statistical analysis of k-mer composition in both DNA and RNA sequence.
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2025-04-22 |
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fastplong
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public |
Ultra-fast preprocessing and quality control for long-read sequencing data.
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2025-04-22 |
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gene-trajectory-python
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public |
Compute gene trajectories
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2025-04-22 |
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inmoose
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public |
InMoose is the Integrated Multi Omic Open Source Environment. It is a collection of tools for the analysis of omic data.
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2025-04-22 |
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cloudspades
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public |
A module of the SPAdes assembler aimed at genome assembly from linked read technologies (10x, Tellseq, Haplotagging).
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2025-04-22 |
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vclust
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public |
Fast and accurate tool for calculating ANI and clustering virus genomes and metagenomes.
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2025-04-22 |
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fmsi
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public |
FMSI - memory efficient k-mer set index based on masked superstrings and Burrows-Wheeler transform.
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2025-04-22 |
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r-chromvarmotifs
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public |
Stores several motifs as PWMatrixList objects for use in R with packages like motifmatchr and chromVAR.
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2025-04-22 |
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r-archr
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public |
This package is designed to streamline scATAC analyses in R.
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2025-04-22 |
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longcallr_nn
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public |
longcallR_nn is a variant caller specifically designed for long-read RNA-seq data utilizing a ResNet model.
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2025-04-22 |
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gafpack
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public |
Convert alignments to pangenome variation graphs to coverage maps
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2025-04-22 |
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seqspec
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public |
File format that describes data generated from genomics experiments. File format and seqspec tool enable uniform processing of genomics data.
|
2025-04-22 |
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meta_eukaryome_detect
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public |
Pathogen, Parasite, Eukaryote and Virus detection in metagenomes.
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2025-04-22 |
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devider
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public |
Haplotyping small sequences from heterogeneous long-read sequencing samples with a SNP-encoded positional de Bruijn graphs.
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2025-04-22 |
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phabox
|
public |
Virus identification and analysis tool set
|
2025-04-22 |
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cosigt
|
public |
Cosigt (COsine SImilarity-based GenoTyper)
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2025-04-22 |
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sfold
|
public |
Software for Statistical Folding of Nucleic Acids
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2025-04-22 |
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samshee
|
public |
A schema-agnostic parser and writer for illumina sample sheets v2.
|
2025-04-22 |
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gfainject
|
public |
Inject alignment into pangenome graphs
|
2025-04-22 |
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pantax
|
public |
Strain-level metagenomic profiling using pangenome graphs with PanTax
|
2025-04-22 |
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sipros
|
public |
Tools for stable isotopic mass spectrometry-based metaproteomics
|
2025-04-22 |
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lz-ani
|
public |
Fast and accurate tool for calculating Average Nucleotide Identity (ANI) among virus and bacteria genomes
|
2025-04-22 |
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patchify
|
public |
A library that helps you split image into small, overlappable patches, and merge patches back into the original image.
|
2025-04-22 |
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hmftools-chord
|
public |
Predict HRD using somatic mutations contexts
|
2025-04-22 |
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tefinder
|
public |
Programs for transposable element search and annotation in large eukaryotic genome sequence.
|
2025-04-22 |
