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predicthaplo
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public |
This software aims at reconstructing haplotypes from next-generation sequencing data.
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2025-09-02 |
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deeplc
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public |
DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
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2025-09-02 |
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sequana_pipetools
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public |
A set of tools to help building or using Sequana pipelines
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2025-09-02 |
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deacon
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public |
Fast alignment-free sequence filter
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2025-09-02 |
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perl-term-table
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public |
Format a header and rows into a table
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2025-09-02 |
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cleanifier
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public |
A fast lightweight tool to remove contamination using k-mers.
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2025-09-02 |
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apscale
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public |
Advanced Pipeline for Simple yet Comprehensive AnaLysEs of DNA metabarcoding data.
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2025-09-02 |
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pybiolib
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public |
BioLib Python Client.
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2025-09-02 |
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haplotype-lso
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public |
Haplotype Candidatus Liberibacter solanacearum (Lso) samples from targeted amplicon capillary sequencing data
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2025-09-02 |
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sequip
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public |
Perl module for biological sequence analysis and supporting utilities..
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2025-09-02 |
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markov_genome
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public |
A Rust package for Markov chain sequence simulation.
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2025-09-02 |
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versionix
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public |
Get version of any tools.
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2025-09-02 |
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varlociraptor
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public |
Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control.
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2025-09-02 |
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nbitk
|
public |
nbitk: Naturalis BioInformatics ToolKit
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2025-09-02 |
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seqspec
|
public |
File format that describes data generated from genomics experiments. File format and seqspec tool enable uniform processing of genomics data.
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2025-09-02 |
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centrifuger
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public |
Lossless compression of microbial genomes for efficient and accurate metagenomic sequence classification.
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2025-09-02 |
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sshash
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public |
SSHash is a compressed dictionary data structure for k-mers (strings of length k over the DNA alphabet {A,C,G,T}), based on Sparse and Skew Hashing.
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2025-09-02 |
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r-shinyngs
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public |
Provides Shiny applications for various array and NGS applications. Currently very RNA-seq centric, with plans for expansion.
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2025-09-02 |
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rgi
|
public |
This tool provides a preliminary annotation of your DNA sequence(s) based upon the data available in The Comprehensive Antibiotic Resistance Database (CARD). Hits to genes tagged with Antibiotic Resistance ontology terms will be highlighted. As CARD expands to include more pathogens, genomes, plasmids, and ontology terms this tool will grow increasingly powerful in providing first-pass detection of antibiotic resistance associated genes. See license at CARD website.
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2025-09-01 |
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vcfanno
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public |
Annotate a VCF with other VCFs/BEDs/tabixed files.
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2025-09-01 |
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chromap
|
public |
Fast alignment and preprocessing of chromatin profiles
|
2025-08-31 |
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perl-parallel-forkmanager
|
public |
A simple parallel processing fork manager
|
2025-08-30 |
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seqsizzle
|
public |
A pager for viewing FASTQ files with fuzzy adaptor matching and coloring.
|
2025-08-30 |
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perl-sys-info-driver-linux
|
public |
Linux driver for Sys::Info
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2025-08-30 |
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circtools
|
public |
circtools - a circular RNA toolbox.
|
2025-08-30 |
