| Package Name | Access | Summary | Updated |
|---|---|---|---|
| snakefmt | public | The uncompromising Snakemake code formatter. | 2025-09-04 |
| nanopolish | public | Signal-level algorithms for MinION data. | 2025-09-04 |
| fasttree | public | FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. | 2025-09-04 |
| r-chromvarmotifs | public | Stores several motifs as PWMatrixList objects for use in R with packages like motifmatchr and chromVAR. | 2025-09-03 |
| coreprofiler | public | CoreProfiler, a robust and integrable cgMLST software. | 2025-09-03 |
| pyfaidx | public | pyfaidx: efficient pythonic random access to fasta subsequences | 2025-09-03 |
| chewbbaca | public | A complete suite for gene-by-gene schema creation and strain identification. | 2025-09-03 |
| dajin2 | public | One-step genotyping tools for targeted long-read sequencing. | 2025-09-03 |
| scglue | public | Graph-linked unified embedding for unpaired single-cell multi-omics data integration | 2025-09-03 |
| mmlong2-lite | public | Lightweight workflow for microbial genome recovery using either Nanopore or PacBio HiFi reads | 2025-09-03 |
| perl-bio-easel | public | Perl modules and scripts for interfacing with Sean Eddy's C easel sequence analysis library using Perl's Inline. | 2025-09-03 |
| biobb_common | public | Biobb_common is the base package required to use the biobb packages. | 2025-09-03 |
| cycle_finder | public | A de novo analysis tool for tandem and interspersed repeats based on cycle-finding | 2025-09-03 |
| probeit | public | Probeit: a probe designer for detecting and genotyping pathogen!!! | 2025-09-02 |
| genomedata | public | Tools for accessing large amounts of genomic data. | 2025-09-02 |
| quip | public | Aggressive compression of FASTQ and SAM/BAM files. | 2025-09-02 |
| pureclip | public | PureCLIP is a tool to detect protein-RNA interaction footprints from single-nucleotide CLIP-seq data, such as iCLIP and eCLIP. | 2025-09-02 |
| bacpage | public | An easy-to-use pipeline for the assembly and analysis of bacterial genomes. | 2025-09-02 |
| verticall | public | A tool for building recombination-free trees. | 2025-09-02 |
| predicthaplo | public | This software aims at reconstructing haplotypes from next-generation sequencing data. | 2025-09-02 |
| deeplc | public | DeepLC: Retention time prediction for (modified) peptides using Deep Learning. | 2025-09-02 |
| sequana_pipetools | public | A set of tools to help building or using Sequana pipelines | 2025-09-02 |
| deacon | public | Fast alignment-free sequence filter | 2025-09-02 |
| perl-term-table | public | Format a header and rows into a table | 2025-09-02 |
| cleanifier | public | A fast lightweight tool to remove contamination using k-mers. | 2025-09-02 |
