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perl-spreadsheet-parseexcel
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public |
Read information from an Excel file.
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2024-05-31 |
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kinship-read
|
public |
Relationship Estimation from Ancient DNA version 2 (READv2)
|
2024-05-30 |
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bioconductor-esatac
|
public |
An Easy-to-use Systematic pipeline for ATACseq data analysis
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2024-05-30 |
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bioconductor-contibait
|
public |
Improves Early Build Genome Assemblies using Strand-Seq Data
|
2024-05-30 |
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drop
|
public |
Detection of RNA Outlier Pipeline
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2024-05-29 |
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venndata
|
public |
Package for plotting Venn diagrams with more than 3 sets
|
2024-05-29 |
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bioconductor-gnet2
|
public |
Constructing gene regulatory networks from expression data through functional module inference
|
2024-05-28 |
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bioconductor-rbowtie2
|
public |
An R Wrapper for Bowtie2 and AdapterRemoval
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2024-05-28 |
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bioconductor-exomecopy
|
public |
Copy number variant detection from exome sequencing read depth
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2024-05-28 |
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bioconductor-bdmmacorrect
|
public |
Meta-analysis for the metagenomic read counts data from different cohorts
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2024-05-28 |
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bioconductor-grohmm
|
public |
GRO-seq Analysis Pipeline
|
2024-05-28 |
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sinto
|
public |
sinto: tools for single-cell data processing
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2024-05-28 |
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rabbittclust
|
public |
RabbitTClust enables fast clustering analysis of millions bacteria genomes with MinHash sketches
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2024-05-28 |
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slivar
|
public |
filter/annotate variants in VCF/BCF format with simple expressions
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2024-05-28 |
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syri
|
public |
Synteny and rearrangement identifier between whole-genome assemblies
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2024-05-28 |
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smallgenomeutilities
|
public |
A collection of scripts that are useful for dealing with viral RNA NGS data.
|
2024-05-27 |
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pydbsnp
|
public |
Interface with dbSNP VCF data
|
2024-05-27 |
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cnasim
|
public |
Improved simulation of single-cell copy number profiles and DNA-seq data from tumors
|
2024-05-27 |
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metaphlan
|
public |
Metagenomic Phylogenetic Analysis
|
2024-05-27 |
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python-crypt4gh
|
public |
GA4GH cryptographic tools
|
2024-05-27 |
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svclone
|
public |
Computational method for inferring cancer cell fraction of tumour SVs from WGS
|
2024-05-27 |
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hmftools-sv-prep
|
public |
SV Prep generates a maximally filtered SV BAM file by identifying candidate SV junctions and extracting all reads that may provide support to that junction.
|
2024-05-26 |
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rnavirhost
|
public |
RNAVirHost: a machine learning-based method for predicting hosts of RNA viruses through viral genomes
|
2024-05-25 |
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toil
|
public |
A scalable, efficient, cross-platform and easy-to-use workflow engine in pure Python
|
2024-05-24 |
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methplotlib
|
public |
Plot methylation data obtained from nanopolish
|
2024-05-24 |
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kitsune
|
public |
kitsune
|
2024-05-24 |
|
biobb_ml
|
public |
Biobb_ml is the Biobb module collection to perform machine learning predictions.
|
2024-05-24 |
|
wbuild
|
public |
Automatic build tool for R Reports
|
2024-05-24 |
|
wgd
|
public |
wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication
|
2024-05-24 |
|
shigapass
|
public |
ShigaPass: An in silico tool to predict Shigella serotypes
|
2024-05-24 |
|
pxblat
|
public |
PxBLAT: An Efficient and Ergonomics Python Binding Library for BLAT.
|
2024-05-24 |
|
oncopipe
|
public |
Functions for running Snakemake modules
|
2024-05-23 |
|
cured
|
public |
Classification Using Restriction Enzyme Diagnostics
|
2024-05-23 |
|
naibr-plus
|
public |
Identify novel adjacencies created by structural variations using linked-read data
|
2024-05-23 |
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tsebra
|
public |
TSEBRA is a combiner tool that selects transcripts from gene predictions based on the support by extrisic evidence in form of introns and start/stop codons.
|
2024-05-23 |
|
snpeff
|
public |
Genetic variant annotation and effect prediction toolbox
|
2024-05-23 |
|
bioconductor-maigespack
|
public |
Functions to handle cDNA microarray data, including several methods of data analysis
|
2024-05-10 |
|
pstrain
|
public |
An Iterative Microbial Strains Profiling Algorithm for Shotgun Metagenomic Sequencing Data
|
2024-05-10 |
|
ebcsgen
|
public |
eBSCgen is a tool for development and analysis of models written in Biochemical Space Language (BCSL).
|
2024-05-10 |
|
liqa
|
public |
A statistical tool to quantify isoform-specific expression using long-read RNA-seq.
|
2024-05-10 |
|
kpop
|
public |
An assembly-free and scalable method for the comparative analysis of microbial genomes, based on full k-mer spectra and dataset-specific transformations.
|
2024-05-09 |
|
yaggo
|
public |
Yaggo is a tool to generate command line parsers for C++. Yaggo stands for "Yet Another GenGetOpt" and is inspired by GNU Gengetopt.
|
2024-05-09 |
|
bioconductor-cohcap
|
public |
CpG Island Analysis Pipeline for Illumina Methylation Array and Targeted BS-Seq Data
|
2024-05-09 |
|
instrain
|
public |
Calculation of strain-level metrics
|
2024-05-09 |
|
cgelib
|
public |
This package will in time replace the cgecore package. The package contains classes and functions intended to be utilized across the CGE tools.
|
2024-05-08 |
|
snakefmt
|
public |
The uncompromising Snakemake code formatter
|
2024-05-08 |
|
rebar
|
public |
Genomic recombination detection using mutational barcodes.
|
2024-05-08 |
|
tadrep
|
public |
TaDRep: Targeted Detection and Reconstruction of Plasmids
|
2024-05-07 |
|
bioconductor-coregnet
|
public |
CoRegNet : reconstruction and integrated analysis of co-regulatory networks
|
2024-05-07 |
|
r-workflowscriptscommon
|
public |
Common functions for making R function wapper scripts. Functions in R packages are hard to call when building workflows outside of R, so this package is used by other packages (e.g. r-seurat-scripts) to add sets of simple wrappers with robust argument parsing.
|
2024-05-07 |
