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mockinbird
|
public |
A fully automatic and reproducible PAR-CLIP analysis pipeline
|
2024-05-07 |
|
pygenometracks
|
public |
Standalone program and library to plot beautiful genome browser tracks.
|
2024-05-07 |
|
squigualiser
|
public |
Visualise ONT raw signals
|
2024-05-06 |
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seqlogo
|
public |
Python port of the R Bioconductor `seqlogo` package
|
2024-05-03 |
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genotyphi
|
public |
Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)
|
2024-05-03 |
|
favites_lite
|
public |
FAVITES-Lite: A lightweight framework for viral transmission and evolution simulation
|
2024-05-03 |
|
dragonflye
|
public |
Microbial assembly pipeline for Nanopore reads
|
2024-05-03 |
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microview
|
public |
Generate reports from taxonomic classification data
|
2024-05-03 |
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ddocent
|
public |
dDocent is an interactive bash wrapper to QC, assemble, map, and call SNPs from all types of RAD data
|
2024-05-03 |
|
trimnami
|
public |
Read-trimming pipelines for multiple samples
|
2024-05-02 |
|
bedgovcf
|
public |
A simple tool to convert BED files to VCF files
|
2024-05-02 |
|
gimbleprep
|
public |
Preprocess fasta, bam and vcf files ready to be used by gimble
|
2024-05-01 |
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mitos
|
public |
MITOS is a tool for the annotation of metazoan mitochondrial genomes.
|
2024-05-01 |
|
recon
|
public |
No Summary
|
2024-05-01 |
|
hicmatrix
|
public |
Library to manage Hi-C matrices for HiCExplorer and pyGenomeTracks
|
2024-04-30 |
|
ncbi-datasets-pylib
|
public |
Easily gather data from across NCBI databases
|
2024-04-29 |
|
riassigner
|
public |
GC-MS retention index calculation
|
2024-04-29 |
|
ripcal
|
public |
RIPCAL is used for the bioinformatic analysis of repeat-induced point mutation (RIP) in fungal genome sequences
|
2024-04-29 |
|
perl-bio-kmer
|
public |
A perl module for helping with kmer analysis.
|
2024-04-26 |
|
radiant
|
public |
Annotate proteomes with protein domains
|
2024-04-26 |
|
metamate
|
public |
metaMATE: your metabarcoding friend!
|
2024-04-26 |
|
sequenoscope
|
public |
sequenoscope is a versatile bioinformatic pipeline for the analysis of sequencing data.
|
2024-04-25 |
|
astral-tree
|
public |
ASTRAL is a tool for estimating an unrooted species tree given a set of unrooted gene trees.
|
2024-04-25 |
|
tajimas_d
|
public |
Computes Tajimas D, the Pi- or Watterson-Estimator for multiple sequences.
|
2024-04-25 |
|
ppx
|
public |
A Python interface to proteomics data repositories
|
2024-04-25 |
|
pyensembl
|
public |
Python interface to ensembl reference genome metadata
|
2024-04-25 |
|
gemini
|
public |
a lightweight db framework for disease and population genetics.
|
2024-04-25 |
|
primers
|
public |
This is a small, straightforward tool for creating PCR primers. Its target use-case is DNA assembly.
|
2024-04-24 |
|
phynteny
|
public |
Phynteny: Synteny-based prediction of bacteriophage genes
|
2024-04-24 |
|
tracknado
|
public |
CLI library to generate UCSC trackhubs from sequencing data
|
2024-04-24 |
|
shiver
|
public |
SHIVER - Sequences from HIV Easily Reconstructed
|
2024-04-24 |
|
cdbtools
|
public |
CDB (Constant DataBase) indexing and retrieval tools for FASTA files
|
2024-04-24 |
|
goleft
|
public |
goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary
|
2024-04-22 |
|
exonerate
|
public |
Exonerate - A generic tool for pairwise sequence comparison / alignment
|
2024-04-21 |
|
trackhub
|
public |
Create and manage UCSC track hubs from Python
|
2024-04-21 |
|
pypgatk
|
public |
The Pypgatk framework and library provides a set of tools to perform ProteoGenomics Analysis.
|
2024-04-20 |
|
peka
|
public |
Analysis of kmers located around locations of interest
|
2024-04-19 |
|
rnamining
|
public |
Package to predict potential coding of RNA sequences provided in fasta format
|
2024-04-19 |
|
rust-bio-tools
|
public |
A growing collection of fast and secure command line utilities for dealing with NGS data
implemented on top of Rust-Bio.
|
2024-04-19 |
|
vcfanno
|
public |
annotate a VCF with other VCFs/BEDs/tabixed files
|
2024-04-19 |
|
jolytree
|
public |
Fast alignment-free phylogenetic reconstruction from genome sequences
|
2024-04-19 |
|
salty
|
public |
SaLTy assigns a lineage to Staphylococcus aureus WGS data and is suitable for describing large-scale S. aureus genomic epidemiology.
|
2024-04-19 |
|
robust-bias-aware
|
public |
Robust bias aware.
|
2024-04-18 |
|
colabfold
|
public |
ColabFold: making protein folding accessible to all
|
2024-04-18 |
|
malva
|
public |
genotyping by Mapping-free ALternate-allele detection of known VAriants
|
2024-04-18 |
|
segzoo
|
public |
System for turnkey analysis of semi-automated genome annotations
|
2024-04-18 |
|
poly-qtlseq
|
public |
PolyploidQtlSeq is a program that extends QTL-seq for polyploid F1 populations.
|
2024-04-16 |
|
clippy
|
public |
An intuitive and interactive peak caller for CLIP data
|
2024-04-15 |
|
monopogen
|
public |
Monopogen is an analysis package for SNV calling from single-cell sequencing datasets generated from single cell RNA 10x 5', 10x 3', single ATAC-seq technoloiges, scDNA-seq, etc.
|
2024-04-15 |
|
helitronscanner
|
public |
HelitronScanner uncovers a large overlooked cache of Helitron transposons in many genomes
|
2024-04-14 |
