About Anaconda Help Download Anaconda

Functions are provided that facilitate the import and analysis of SNP (single nucleotide polymorphism) and silicodart (presence/absence) data. The main focus is on data generated by DarT (Diversity Arrays Technology). However, once SNP or related fragment presence/absence data from any source is imported into a genlight object many of the functions can be used. Functions are available for input and output of SNP and silicodart data, for reporting on and filtering on various criteria (e.g. CallRate, Heterozygosity, Reproducibility, maximum allele frequency). Advanced filtering is based on Linkage Disequilibrium and HWE (Hardy-Weinberg equilibrium). Other functions are available for visualization after PCoA (Principle Coordinate Analysis), or to facilitate transfer of data between genlight/genind objects and newhybrids, related, phylip, structure, faststructure packages.

Type Size Name Uploaded Downloads Labels
conda 3.8 MB | noarch/r-dartr-2.9.7-r43h3121a25_1.tar.bz2  1 year and 10 months ago 1353 main
conda 3.8 MB | noarch/r-dartr-2.9.7-r42h3121a25_0.tar.bz2  1 year and 10 months ago 152 main
conda 3.4 MB | noarch/r-dartr-2.0.4-r42h3121a25_1.tar.bz2  2 years and 6 months ago 1833 main
conda 3.4 MB | noarch/r-dartr-2.0.4-r41h3121a25_0.tar.bz2  2 years and 11 months ago 411 main
conda 3.9 MB | noarch/r-dartr-2.0.3-r41h3121a25_0.tar.bz2  3 years and 2 months ago 2194 main
conda 2.9 MB | noarch/r-dartr-1.9.9.1-r41h3121a25_1.tar.bz2  3 years and 11 months ago 2654 main
conda 2.9 MB | noarch/r-dartr-1.9.9.1-r40h3121a25_0.tar.bz2  4 years and 4 days ago 230 main
conda 2.9 MB | noarch/r-dartr-1.9.6-r40h3121a25_0.tar.bz2  4 years and 1 month ago 2607 main
conda 2.9 MB | noarch/r-dartr-1.9.4-r40h3121a25_0.tar.bz2  4 years and 1 month ago 2606 main
conda 2.3 MB | noarch/r-dartr-1.1.11-r40h3121a25_2.tar.bz2  4 years and 2 months ago 234 main
conda 2.3 MB | noarch/r-dartr-1.1.11-r40h6115d3f_1.tar.bz2  5 years and 19 days ago 2634 main
conda 2.3 MB | noarch/r-dartr-1.1.11-r351h6115d3f_0.tar.bz2  6 years and 19 days ago 358 main
conda 1.5 MB | noarch/r-dartr-1.0.5-r351h6115d3f_1.tar.bz2  6 years and 2 months ago 2721 main
conda 1.5 MB | linux-64/r-dartr-1.0.5-r351h6115d3f_0.tar.bz2  6 years and 7 months ago 2439 main cf201901
conda 1.3 MB | linux-64/r-dartr-1.0.5-r341h6115d3f_0.tar.bz2  6 years and 7 months ago 359 main cf201901
conda 1.2 MB | linux-64/r-dartr-1.0-r3.4.1_0.tar.bz2  7 years and 1 month ago 4911 main cf201901

© 2025 Anaconda, Inc. All Rights Reserved. (v4.1.0) Legal | Privacy Policy