About Anaconda Help Download Anaconda

Functions are provided that facilitate the import and analysis of SNP (single nucleotide polymorphism) and silicodart (presence/absence) data. The main focus is on data generated by DarT (Diversity Arrays Technology). However, once SNP or related fragment presence/absence data from any source is imported into a genlight object many of the functions can be used. Functions are available for input and output of SNP and silicodart data, for reporting on and filtering on various criteria (e.g. CallRate, Heterozygosity, Reproducibility, maximum allele frequency). Advanced filtering is based on Linkage Disequilibrium and HWE (Hardy-Weinberg equilibrium). Other functions are available for visualization after PCoA (Principle Coordinate Analysis), or to facilitate transfer of data between genlight/genind objects and newhybrids, related, phylip, structure, faststructure packages.

Type Size Name Uploaded Downloads Labels
conda 3.8 MB | noarch/r-dartr-2.9.7-r43h3121a25_1.tar.bz2  2 years and 29 days ago 1401 main
conda 3.8 MB | noarch/r-dartr-2.9.7-r42h3121a25_0.tar.bz2  2 years and 1 month ago 171 main
conda 3.4 MB | noarch/r-dartr-2.0.4-r42h3121a25_1.tar.bz2  2 years and 9 months ago 1853 main
conda 3.4 MB | noarch/r-dartr-2.0.4-r41h3121a25_0.tar.bz2  3 years and 2 months ago 429 main
conda 3.9 MB | noarch/r-dartr-2.0.3-r41h3121a25_0.tar.bz2  3 years and 4 months ago 2214 main
conda 2.9 MB | noarch/r-dartr-1.9.9.1-r41h3121a25_1.tar.bz2  4 years and 2 months ago 2674 main
conda 2.9 MB | noarch/r-dartr-1.9.9.1-r40h3121a25_0.tar.bz2  4 years and 2 months ago 248 main
conda 2.9 MB | noarch/r-dartr-1.9.6-r40h3121a25_0.tar.bz2  4 years and 3 months ago 2628 main
conda 2.9 MB | noarch/r-dartr-1.9.4-r40h3121a25_0.tar.bz2  4 years and 4 months ago 2642 main
conda 2.3 MB | noarch/r-dartr-1.1.11-r40h3121a25_2.tar.bz2  4 years and 4 months ago 251 main
conda 2.3 MB | noarch/r-dartr-1.1.11-r40h6115d3f_1.tar.bz2  5 years and 3 months ago 2655 main
conda 2.3 MB | noarch/r-dartr-1.1.11-r351h6115d3f_0.tar.bz2  6 years and 3 months ago 376 main
conda 1.5 MB | noarch/r-dartr-1.0.5-r351h6115d3f_1.tar.bz2  6 years and 4 months ago 2742 main
conda 1.5 MB | linux-64/r-dartr-1.0.5-r351h6115d3f_0.tar.bz2  6 years and 9 months ago 2460 main cf201901
conda 1.3 MB | linux-64/r-dartr-1.0.5-r341h6115d3f_0.tar.bz2  6 years and 9 months ago 379 main cf201901
conda 1.2 MB | linux-64/r-dartr-1.0-r3.4.1_0.tar.bz2  7 years and 3 months ago 4935 main cf201901

© 2025 Anaconda, Inc. All Rights Reserved. (v4.2.0) Legal | Privacy Policy