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bioconda / packages / megadepth

Megadepth is an efficient tool for extracting coverage related information from RNA and DNA-seq BAM and BigWig files. It supports reading whole-genome coverage from BAM files and writing either indexed TSV or BigWig files, as well as efficient region coverage summary over intervals from both types of files.

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Type Size Name Uploaded Downloads Labels
conda 105.6 kB | osx-64/megadepth-1.2.0-h1f6ca2e_7.tar.bz2  3 months and 4 days ago 23 main
conda 114.0 kB | linux-64/megadepth-1.2.0-h5ca1c30_7.tar.bz2  3 months and 5 days ago 64 main
conda 110.3 kB | linux-64/megadepth-1.2.0-h43eeafb_6.tar.bz2  9 months and 12 days ago 271 main
conda 105.7 kB | osx-64/megadepth-1.2.0-hd576cc4_6.tar.bz2  9 months and 14 days ago 530 main
conda 107.4 kB | osx-64/megadepth-1.2.0-h1bb6673_5.tar.bz2  1 year and 9 months ago 57 main
conda 110.3 kB | linux-64/megadepth-1.2.0-h6ab5fc9_5.tar.bz2  1 year and 10 months ago 203 main
conda 110.9 kB | linux-64/megadepth-1.2.0-hff880f7_4.tar.bz2  2 years and 10 days ago 123 main
conda 105.6 kB | osx-64/megadepth-1.2.0-h5d6ff1e_4.tar.bz2  2 years and 13 days ago 45 main
conda 110.4 kB | osx-64/megadepth-1.2.0-h06c6b18_3.tar.bz2  2 years and 6 months ago 60 main
conda 110.6 kB | linux-64/megadepth-1.2.0-hea94271_3.tar.bz2  2 years and 6 months ago 197 main
conda 114.3 kB | osx-64/megadepth-1.2.0-h8e4e0c9_2.tar.bz2  2 years and 7 months ago 1255 main
conda 110.4 kB | linux-64/megadepth-1.2.0-he1ff611_2.tar.bz2  2 years and 7 months ago 160 main
conda 110.4 kB | linux-64/megadepth-1.2.0-h15cb65e_1.tar.bz2  3 years and 25 days ago 187 main
conda 113.3 kB | osx-64/megadepth-1.2.0-h5f57fea_1.tar.bz2  3 years and 25 days ago 380 main
conda 109.2 kB | linux-64/megadepth-1.2.0-h00214ad_0.tar.bz2  3 years and 1 month ago 170 main
conda 111.2 kB | osx-64/megadepth-1.2.0-h5a58f0d_0.tar.bz2  3 years and 1 month ago 73 main
conda 104.0 kB | linux-64/megadepth-1.1.3-h00214ad_1.tar.bz2  3 years and 2 months ago 182 main
conda 107.5 kB | osx-64/megadepth-1.1.3-h5a58f0d_1.tar.bz2  3 years and 2 months ago 69 main
conda 103.7 kB | linux-64/megadepth-1.1.3-ha140323_0.tar.bz2  3 years and 2 months ago 183 main
conda 107.3 kB | osx-64/megadepth-1.1.3-hcdc8842_0.tar.bz2  3 years and 2 months ago 2183 main
conda 107.1 kB | linux-64/megadepth-1.1.2-ha140323_0.tar.bz2  3 years and 5 months ago 190 main
conda 110.2 kB | osx-64/megadepth-1.1.2-hcdc8842_0.tar.bz2  3 years and 5 months ago 2343 main
conda 109.6 kB | osx-64/megadepth-1.1.1-hcdc8842_0.tar.bz2  3 years and 6 months ago 2434 main
conda 105.5 kB | linux-64/megadepth-1.1.1-ha140323_0.tar.bz2  3 years and 6 months ago 219 main
conda 106.4 kB | linux-64/megadepth-1.1.0-ha140323_1.tar.bz2  3 years and 11 months ago 237 main
conda 108.6 kB | osx-64/megadepth-1.1.0-hcdc8842_1.tar.bz2  3 years and 11 months ago 2713 main
conda 109.1 kB | osx-64/megadepth-1.1.0-h8ff1812_0.tar.bz2  4 years and 2 months ago 220 main
conda 98.8 kB | linux-64/megadepth-1.1.0-h5675ecd_0.tar.bz2  4 years and 2 months ago 214 main
conda 108.0 kB | osx-64/megadepth-1.0.9b-h8ff1812_0.tar.bz2  4 years and 2 months ago 2826 main
conda 96.5 kB | linux-64/megadepth-1.0.9b-h5675ecd_0.tar.bz2  4 years and 2 months ago 207 main
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