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bioconda / packages / megadepth

Megadepth is an efficient tool for extracting coverage related information from RNA and DNA-seq BAM and BigWig files. It supports reading whole-genome coverage from BAM files and writing either indexed TSV or BigWig files, as well as efficient region coverage summary over intervals from both types of files.

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Type Size Name Uploaded Downloads Labels
conda 105.6 kB | osx-64/megadepth-1.2.0-h1f6ca2e_7.tar.bz2  8 months and 14 days ago 47 main
conda 114.0 kB | linux-64/megadepth-1.2.0-h5ca1c30_7.tar.bz2  8 months and 15 days ago 183 main
conda 110.3 kB | linux-64/megadepth-1.2.0-h43eeafb_6.tar.bz2  1 year and 2 months ago 405 main
conda 105.7 kB | osx-64/megadepth-1.2.0-hd576cc4_6.tar.bz2  1 year and 2 months ago 593 main
conda 107.4 kB | osx-64/megadepth-1.2.0-h1bb6673_5.tar.bz2  2 years and 3 months ago 71 main
conda 110.3 kB | linux-64/megadepth-1.2.0-h6ab5fc9_5.tar.bz2  2 years and 3 months ago 254 main
conda 110.9 kB | linux-64/megadepth-1.2.0-hff880f7_4.tar.bz2  2 years and 5 months ago 169 main
conda 105.6 kB | osx-64/megadepth-1.2.0-h5d6ff1e_4.tar.bz2  2 years and 5 months ago 56 main
conda 110.4 kB | osx-64/megadepth-1.2.0-h06c6b18_3.tar.bz2  2 years and 11 months ago 72 main
conda 110.6 kB | linux-64/megadepth-1.2.0-hea94271_3.tar.bz2  2 years and 11 months ago 241 main
conda 114.3 kB | osx-64/megadepth-1.2.0-h8e4e0c9_2.tar.bz2  3 years and 15 days ago 1265 main
conda 110.4 kB | linux-64/megadepth-1.2.0-he1ff611_2.tar.bz2  3 years and 15 days ago 204 main
conda 110.4 kB | linux-64/megadepth-1.2.0-h15cb65e_1.tar.bz2  3 years and 6 months ago 234 main
conda 113.3 kB | osx-64/megadepth-1.2.0-h5f57fea_1.tar.bz2  3 years and 6 months ago 391 main
conda 109.2 kB | linux-64/megadepth-1.2.0-h00214ad_0.tar.bz2  3 years and 6 months ago 215 main
conda 111.2 kB | osx-64/megadepth-1.2.0-h5a58f0d_0.tar.bz2  3 years and 6 months ago 85 main
conda 104.0 kB | linux-64/megadepth-1.1.3-h00214ad_1.tar.bz2  3 years and 7 months ago 227 main
conda 107.5 kB | osx-64/megadepth-1.1.3-h5a58f0d_1.tar.bz2  3 years and 7 months ago 80 main
conda 103.7 kB | linux-64/megadepth-1.1.3-ha140323_0.tar.bz2  3 years and 8 months ago 226 main
conda 107.3 kB | osx-64/megadepth-1.1.3-hcdc8842_0.tar.bz2  3 years and 8 months ago 2244 main
conda 107.1 kB | linux-64/megadepth-1.1.2-ha140323_0.tar.bz2  3 years and 10 months ago 234 main
conda 110.2 kB | osx-64/megadepth-1.1.2-hcdc8842_0.tar.bz2  3 years and 10 months ago 2404 main
conda 109.6 kB | osx-64/megadepth-1.1.1-hcdc8842_0.tar.bz2  4 years and 4 days ago 2494 main
conda 105.5 kB | linux-64/megadepth-1.1.1-ha140323_0.tar.bz2  4 years and 4 days ago 263 main
conda 106.4 kB | linux-64/megadepth-1.1.0-ha140323_1.tar.bz2  4 years and 4 months ago 279 main
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