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bioconda / packages / megadepth

Megadepth is an efficient tool for extracting coverage related information from RNA and DNA-seq BAM and BigWig files. It supports reading whole-genome coverage from BAM files and writing either indexed TSV or BigWig files, as well as efficient region coverage summary over intervals from both types of files.

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Type Size Name Uploaded Downloads Labels
conda 110.3 kB | linux-64/megadepth-1.2.0-h43eeafb_6.tar.bz2  5 months and 13 days ago 132 main
conda 105.7 kB | osx-64/megadepth-1.2.0-hd576cc4_6.tar.bz2  5 months and 15 days ago 341 main
conda 107.4 kB | osx-64/megadepth-1.2.0-h1bb6673_5.tar.bz2  1 year and 5 months ago 48 main
conda 110.3 kB | linux-64/megadepth-1.2.0-h6ab5fc9_5.tar.bz2  1 year and 6 months ago 159 main
conda 110.9 kB | linux-64/megadepth-1.2.0-hff880f7_4.tar.bz2  1 year and 8 months ago 98 main
conda 105.6 kB | osx-64/megadepth-1.2.0-h5d6ff1e_4.tar.bz2  1 year and 8 months ago 38 main
conda 110.4 kB | osx-64/megadepth-1.2.0-h06c6b18_3.tar.bz2  2 years and 2 months ago 52 main
conda 110.6 kB | linux-64/megadepth-1.2.0-hea94271_3.tar.bz2  2 years and 2 months ago 157 main
conda 114.3 kB | osx-64/megadepth-1.2.0-h8e4e0c9_2.tar.bz2  2 years and 3 months ago 1245 main
conda 110.4 kB | linux-64/megadepth-1.2.0-he1ff611_2.tar.bz2  2 years and 3 months ago 135 main
conda 110.4 kB | linux-64/megadepth-1.2.0-h15cb65e_1.tar.bz2  2 years and 8 months ago 160 main
conda 113.3 kB | osx-64/megadepth-1.2.0-h5f57fea_1.tar.bz2  2 years and 8 months ago 371 main
conda 109.2 kB | linux-64/megadepth-1.2.0-h00214ad_0.tar.bz2  2 years and 9 months ago 146 main
conda 111.2 kB | osx-64/megadepth-1.2.0-h5a58f0d_0.tar.bz2  2 years and 9 months ago 63 main
conda 104.0 kB | linux-64/megadepth-1.1.3-h00214ad_1.tar.bz2  2 years and 10 months ago 156 main
conda 107.5 kB | osx-64/megadepth-1.1.3-h5a58f0d_1.tar.bz2  2 years and 10 months ago 60 main
conda 103.7 kB | linux-64/megadepth-1.1.3-ha140323_0.tar.bz2  2 years and 10 months ago 152 main
conda 107.3 kB | osx-64/megadepth-1.1.3-hcdc8842_0.tar.bz2  2 years and 10 months ago 1990 main
conda 107.1 kB | linux-64/megadepth-1.1.2-ha140323_0.tar.bz2  3 years and 1 month ago 161 main
conda 110.2 kB | osx-64/megadepth-1.1.2-hcdc8842_0.tar.bz2  3 years and 1 month ago 2151 main
conda 109.6 kB | osx-64/megadepth-1.1.1-hcdc8842_0.tar.bz2  3 years and 2 months ago 2239 main
conda 105.5 kB | linux-64/megadepth-1.1.1-ha140323_0.tar.bz2  3 years and 2 months ago 195 main
conda 106.4 kB | linux-64/megadepth-1.1.0-ha140323_1.tar.bz2  3 years and 7 months ago 208 main
conda 108.6 kB | osx-64/megadepth-1.1.0-hcdc8842_1.tar.bz2  3 years and 7 months ago 2521 main
conda 109.1 kB | osx-64/megadepth-1.1.0-h8ff1812_0.tar.bz2  3 years and 10 months ago 208 main
conda 98.8 kB | linux-64/megadepth-1.1.0-h5675ecd_0.tar.bz2  3 years and 10 months ago 188 main
conda 108.0 kB | osx-64/megadepth-1.0.9b-h8ff1812_0.tar.bz2  3 years and 10 months ago 2644 main
conda 96.5 kB | linux-64/megadepth-1.0.9b-h5675ecd_0.tar.bz2  3 years and 10 months ago 180 main
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