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Megadepth is an efficient tool for extracting coverage related information from RNA and DNA-seq BAM and BigWig files. It supports reading whole-genome coverage from BAM files and writing either indexed TSV or BigWig files, as well as efficient region coverage summary over intervals from both types of files.

Type Size Name Uploaded Downloads Labels
conda 105.6 kB | osx-64/megadepth-1.2.0-h1f6ca2e_7.tar.bz2  4 months and 1 day ago 26 main
conda 114.0 kB | linux-64/megadepth-1.2.0-h5ca1c30_7.tar.bz2  4 months and 2 days ago 76 main
conda 110.3 kB | linux-64/megadepth-1.2.0-h43eeafb_6.tar.bz2  10 months and 10 days ago 289 main
conda 105.7 kB | osx-64/megadepth-1.2.0-hd576cc4_6.tar.bz2  10 months and 12 days ago 580 main
conda 107.4 kB | osx-64/megadepth-1.2.0-h1bb6673_5.tar.bz2  1 year and 10 months ago 58 main
conda 110.3 kB | linux-64/megadepth-1.2.0-h6ab5fc9_5.tar.bz2  1 year and 10 months ago 209 main
conda 110.9 kB | linux-64/megadepth-1.2.0-hff880f7_4.tar.bz2  2 years and 1 month ago 129 main
conda 105.6 kB | osx-64/megadepth-1.2.0-h5d6ff1e_4.tar.bz2  2 years and 1 month ago 45 main
conda 110.4 kB | osx-64/megadepth-1.2.0-h06c6b18_3.tar.bz2  2 years and 7 months ago 60 main
conda 110.6 kB | linux-64/megadepth-1.2.0-hea94271_3.tar.bz2  2 years and 7 months ago 203 main
conda 114.3 kB | osx-64/megadepth-1.2.0-h8e4e0c9_2.tar.bz2  2 years and 8 months ago 1255 main
conda 110.4 kB | linux-64/megadepth-1.2.0-he1ff611_2.tar.bz2  2 years and 8 months ago 166 main
conda 110.4 kB | linux-64/megadepth-1.2.0-h15cb65e_1.tar.bz2  3 years and 1 month ago 193 main
conda 113.3 kB | osx-64/megadepth-1.2.0-h5f57fea_1.tar.bz2  3 years and 1 month ago 380 main
conda 109.2 kB | linux-64/megadepth-1.2.0-h00214ad_0.tar.bz2  3 years and 2 months ago 176 main
conda 111.2 kB | osx-64/megadepth-1.2.0-h5a58f0d_0.tar.bz2  3 years and 2 months ago 73 main

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