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EpiCSeg (Epigenome Count-based Segmentation) is a software for annotating the genome based on the state of the chromatin. It provides tools for extracting count data from BAM files, typlically corresponding to ChIP-seq experiments for histone marks (but other choices are possible) it learns a statistical model for the read counts based on a HMM, it annotates the genome, and it provides tools for displaying and analyzing the obtained models and segmentations. EpiCSeg can be used as an R package or from the command line via Rscript.

Type Size Name Uploaded Downloads Labels
conda 1.5 MB | osx-64/epicseg-1.0-r42h2413b67_8.tar.bz2  1 year and 9 months ago 1271 main
conda 1.5 MB | linux-64/epicseg-1.0-r42h031d066_8.tar.bz2  1 year and 10 months ago 123 main
conda 1.5 MB | osx-64/epicseg-1.0-r42h1e3017b_7.tar.bz2  2 years and 23 days ago 198 main
conda 1.5 MB | linux-64/epicseg-1.0-r42hec16e2b_7.tar.bz2  2 years and 23 days ago 124 main
conda 1.5 MB | osx-64/epicseg-1.0-r41ha5712d3_6.tar.bz2  3 years and 1 month ago 45 main
conda 1.5 MB | linux-64/epicseg-1.0-r41hec16e2b_6.tar.bz2  3 years and 1 month ago 180 main
conda 1.5 MB | linux-64/epicseg-1.0-r41h779adbc_5.tar.bz2  3 years and 2 months ago 168 main
conda 1.5 MB | osx-64/epicseg-1.0-r41hb4d813b_5.tar.bz2  3 years and 2 months ago 763 main
conda 1.5 MB | linux-64/epicseg-1.0-r40h779adbc_4.tar.bz2  4 years and 21 hours ago 210 main
conda 1.5 MB | osx-64/epicseg-1.0-r40hb4d813b_4.tar.bz2  4 years and 1 day ago 570 main
conda 1.5 MB | linux-64/epicseg-1.0-r40h516909a_3.tar.bz2  4 years and 8 months ago 335 main
conda 1.5 MB | osx-64/epicseg-1.0-r40h0b31af3_3.tar.bz2  4 years and 8 months ago 509 main
conda 1.5 MB | linux-64/epicseg-1.0-r351h14c3975_2.tar.bz2  6 years and 18 days ago 480 main
conda 1.4 MB | osx-64/epicseg-1.0-r351h1de35cc_2.tar.bz2  6 years and 18 days ago 83 main
conda 1.5 MB | linux-64/epicseg-1.0-r351h470a237_1.tar.bz2  6 years and 5 months ago 465 main cf201901
conda 1.5 MB | osx-64/epicseg-1.0-r351h470a237_1.tar.bz2  6 years and 5 months ago 1100 main cf201901
conda 1.4 MB | linux-64/epicseg-1.0-r341h470a237_1.tar.bz2  6 years and 7 months ago 366 main cf201901
conda 1.4 MB | osx-64/epicseg-1.0-r341h470a237_1.tar.bz2  6 years and 8 months ago 78 main cf201901
conda 1.4 MB | osx-64/epicseg-1.0-r3.4.1_0.tar.bz2  7 years and 1 month ago 201 main cf201901
conda 1.4 MB | linux-64/epicseg-1.0-r3.4.1_0.tar.bz2  7 years and 1 month ago 437 main cf201901

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