EpiCSeg (Epigenome Count-based Segmentation) is a software for annotating the genome based on the state of the chromatin. It provides tools for extracting count data from BAM files, typlically corresponding to ChIP-seq experiments for histone marks (but other choices are possible) it learns a statistical model for the read counts based on a HMM, it annotates the genome, and it provides tools for displaying and analyzing the obtained models and segmentations. EpiCSeg can be used as an R package or from the command line via Rscript.

Type Size Name Uploaded Uploader Downloads Labels
conda 1.5 MB | linux-64/epicseg-1.0-r40h516909a_3.tar.bz2  1 month and 20 days ago bioconda 54 main
conda 1.5 MB | osx-64/epicseg-1.0-r40h0b31af3_3.tar.bz2  1 month and 20 days ago bioconda 111 main
conda 1.5 MB | linux-64/epicseg-1.0-r351h14c3975_2.tar.bz2  1 year and 6 months ago bioconda 268 main
conda 1.4 MB | osx-64/epicseg-1.0-r351h1de35cc_2.tar.bz2  1 year and 6 months ago bioconda 30 main
conda 1.5 MB | linux-64/epicseg-1.0-r351h470a237_1.tar.bz2  1 year and 10 months ago bioconda 269 main cf201901
conda 1.5 MB | osx-64/epicseg-1.0-r351h470a237_1.tar.bz2  1 year and 10 months ago bioconda 1052 main cf201901
conda 1.4 MB | linux-64/epicseg-1.0-r341h470a237_1.tar.bz2  2 years and 1 month ago bioconda 158 main cf201901
conda 1.4 MB | osx-64/epicseg-1.0-r341h470a237_1.tar.bz2  2 years and 2 months ago bioconda 28 main cf201901
conda 1.4 MB | osx-64/epicseg-1.0-r3.4.1_0.tar.bz2  2 years and 7 months ago bioconda 152 main cf201901
conda 1.4 MB | linux-64/epicseg-1.0-r3.4.1_0.tar.bz2  2 years and 7 months ago bioconda 231 main cf201901
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