EpiCSeg (Epigenome Count-based Segmentation) is a software for annotating the genome based on the state of the chromatin. It provides tools for extracting count data from BAM files, typlically corresponding to ChIP-seq experiments for histone marks (but other choices are possible) it learns a statistical model for the read counts based on a HMM, it annotates the genome, and it provides tools for displaying and analyzing the obtained models and segmentations. EpiCSeg can be used as an R package or from the command line via Rscript.

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v1.0
  • osx-64  v1.0
To install this package with conda run one of the following:
conda install -c bioconda epicseg
conda install -c bioconda/label/cf201901 epicseg

Description

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