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bioconda / packages / clair3

Clair3 is a small variant caller for long-reads. Compare to PEPPER (r0.4), Clair3 (v0.1) shows a better SNP F1-score with ≤30-fold of ONT data (precisionFDA Truth Challenge V2), and a better Indel F1-score, while runs generally four times faster. Clair3 makes the best of both worlds of using pileup or full-alignment as input for deep-learning based long-read small variant calling. Clair3 is simple and modular for easy deployment and integration.

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Type Size Name Uploaded Downloads Labels
conda 208.5 MB | linux-64/clair3-1.0.11-py39hd649744_0.tar.bz2  7 days and 14 hours ago 101 main
conda 208.5 MB | linux-64/clair3-1.0.10-py39hd649744_1.tar.bz2  3 months and 9 days ago 806 main
conda 208.4 MB | linux-64/clair3-1.0.10-py39h46983ab_0.tar.bz2  8 months and 8 hours ago 1398 main
conda 208.3 MB | linux-64/clair3-1.0.8-py39h46983ab_2.tar.bz2  9 months and 16 days ago 376 main
conda 208.3 MB | linux-64/clair3-1.0.8-py39hf5e1c6e_1.tar.bz2  10 months and 19 days ago 1006 main
conda 208.4 MB | linux-64/clair3-1.0.8-py39hf5e1c6e_0.tar.bz2  10 months and 27 days ago 207 main
conda 208.3 MB | linux-64/clair3-1.0.7-py39hf5e1c6e_1.tar.bz2  11 months and 2 days ago 768 main
conda 208.2 MB | linux-64/clair3-1.0.7-py39hf5e1c6e_0.tar.bz2  11 months and 19 days ago 293 main
conda 201.6 MB | linux-64/clair3-1.0.6-py39hf5e1c6e_0.tar.bz2  1 year and 12 days ago 848 main
conda 201.5 MB | linux-64/clair3-1.0.5-py39hf5e1c6e_0.tar.bz2  1 year and 3 months ago 1196 main
conda 201.5 MB | linux-64/clair3-1.0.4-py39hf5e1c6e_3.tar.bz2  1 year and 5 months ago 1359 main
conda 201.6 MB | linux-64/clair3-1.0.4-py39hf5e1c6e_2.tar.bz2  1 year and 7 months ago 450 main
conda 201.5 MB | linux-64/clair3-1.0.4-py39hf5e1c6e_1.tar.bz2  1 year and 8 months ago 301 main
conda 201.6 MB | linux-64/clair3-1.0.4-py39hf5e1c6e_0.tar.bz2  1 year and 8 months ago 123 main
conda 201.5 MB | linux-64/clair3-1.0.3-py39h8492097_0.tar.bz2  1 year and 9 months ago 1572 main
conda 201.5 MB | linux-64/clair3-1.0.2-py39hb9dc472_0.tar.bz2  1 year and 10 months ago 1575 main
conda 142.2 MB | linux-64/clair3-1.0.1-py39hb9dc472_0.tar.bz2  1 year and 11 months ago 1600 main
conda 142.2 MB | linux-64/clair3-1.0.0-py39hb9dc472_1.tar.bz2  2 years and 13 days ago 1734 main
conda 142.2 MB | linux-64/clair3-1.0.0-py39hb9dc472_0.tar.bz2  2 years and 21 days ago 187 main
conda 142.2 MB | linux-64/clair3-0.1.12-py39hb9dc472_6.tar.bz2  2 years and 6 months ago 2727 main
conda 142.3 MB | linux-64/clair3-0.1.12-py39hb9dc472_5.tar.bz2  2 years and 6 months ago 190 main
conda 142.3 MB | linux-64/clair3-0.1.12-py39hb9dc472_4.tar.bz2  2 years and 7 months ago 327 main
conda 142.3 MB | linux-64/clair3-0.1.12-py39hb9dc472_2.tar.bz2  2 years and 7 months ago 161 main
conda 142.3 MB | linux-64/clair3-0.1.12-py39hb9dc472_1.tar.bz2  2 years and 7 months ago 182 main
conda 142.3 MB | linux-64/clair3-0.1.12-py39hb9dc472_0.tar.bz2  2 years and 7 months ago 167 main
conda 145.4 MB | linux-64/clair3-0.1.11-py36hb9dc472_6.tar.bz2  2 years and 8 months ago 2681 main
conda 145.3 MB | linux-64/clair3-0.1.11-py36hb9dc472_5.tar.bz2  2 years and 10 months ago 498 main
conda 145.2 MB | linux-64/clair3-0.1.11-py36hb9dc472_4.tar.bz2  2 years and 11 months ago 368 main
conda 145.2 MB | linux-64/clair3-0.1.11-py36hb9dc472_3.tar.bz2  2 years and 11 months ago 172 main
conda 145.2 MB | linux-64/clair3-0.1.11-py36hb9dc472_2.tar.bz2  2 years and 11 months ago 202 main
conda 145.1 MB | linux-64/clair3-0.1.11-py36hb9dc472_1.tar.bz2  2 years and 11 months ago 215 main
conda 145.3 MB | linux-64/clair3-0.1.11-py36hb9dc472_0.tar.bz2  2 years and 11 months ago 189 main
conda 140.7 MB | noarch/clair3-0.1.10-hdfd78af_0.tar.bz2  3 years and 2 months ago 2324 main
conda 140.8 MB | noarch/clair3-0.1.9-hdfd78af_0.tar.bz2  3 years and 3 months ago 2442 main
conda 140.8 MB | noarch/clair3-0.1.8-hdfd78af_0.tar.bz2  3 years and 4 months ago 2546 main
conda 140.8 MB | noarch/clair3-0.1.7-hdfd78af_0.tar.bz2  3 years and 5 months ago 2640 main
conda 140.8 MB | noarch/clair3-0.1.6-hdfd78af_0.tar.bz2  3 years and 6 months ago 2765 main
conda 140.8 MB | noarch/clair3-0.1.5-hdfd78af_0.tar.bz2  3 years and 8 months ago 2749 main
conda 140.8 MB | noarch/clair3-0.1.4.2-hdfd78af_0.tar.bz2  3 years and 8 months ago 2628 main
conda 140.8 MB | noarch/clair3-0.1.4.1-hdfd78af_0.tar.bz2  3 years and 9 months ago 2555 main
conda 140.8 MB | noarch/clair3-0.1.4-hdfd78af_0.tar.bz2  3 years and 9 months ago 2591 main
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