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bioconda / packages / bioconductor-bsgenome.mmusculus.ucsc.mm8.masked

Full genome sequences for Mus musculus (Mouse) as provided by UCSC (mm8, Feb. 2006) and stored in Biostrings objects. The sequences are the same as in BSgenome.Mmusculus.UCSC.mm8, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default.

Type Size Name Uploaded Downloads Labels
conda 9.3 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm8.masked-1.3.99-r44hdfd78af_13.tar.bz2  21 days and 20 hours ago 31 main
conda 9.3 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm8.masked-1.3.99-r43hdfd78af_12.tar.bz2  1 year and 1 month ago 615 main
conda 9.2 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm8.masked-1.3.99-r43hdfd78af_11.tar.bz2  1 year and 6 months ago 345 main
conda 8.7 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm8.masked-1.3.99-r42hdfd78af_10.tar.bz2  2 years and 2 months ago 575 main
conda 9.0 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm8.masked-1.3.99-r41hdfd78af_9.tar.bz2  2 years and 4 months ago 210 main
conda 8.2 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm8.masked-1.3.99-r41hdfd78af_8.tar.bz2  3 years and 2 months ago 629 main
conda 8.1 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm8.masked-1.3.99-r41hdfd78af_7.tar.bz2  3 years and 7 months ago 287 main
conda 8.0 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm8.masked-1.3.99-r40hdfd78af_6.tar.bz2  3 years and 9 months ago 169 main
conda 7.7 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm8.masked-1.3.99-r40_5.tar.bz2  4 years and 2 months ago 172 main
conda 7.6 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm8.masked-1.3.99-r40_4.tar.bz2  4 years and 8 months ago 185 main
conda 7.2 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm8.masked-1.3.99-r36_3.tar.bz2  5 years and 2 months ago 209 main
conda 7.0 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm8.masked-1.3.99-r36_2.tar.bz2  5 years and 5 months ago 217 main
conda 6.5 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm8.masked-1.3.99-r351_0.tar.bz2  6 years and 1 month ago 261 main gcc7

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