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bioconda / packages / bioconductor-bsgenome.mmusculus.ucsc.mm8.masked

Full genome sequences for Mus musculus (Mouse) as provided by UCSC (mm8, Feb. 2006) and stored in Biostrings objects. The sequences are the same as in BSgenome.Mmusculus.UCSC.mm8, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default.

Type Size Name Uploaded Downloads Labels
conda 9.3 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm8.masked-1.3.99-r43hdfd78af_12.tar.bz2  9 months and 3 days ago 500 main
conda 9.2 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm8.masked-1.3.99-r43hdfd78af_11.tar.bz2  1 year and 2 months ago 329 main
conda 8.7 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm8.masked-1.3.99-r42hdfd78af_10.tar.bz2  1 year and 10 months ago 557 main
conda 9.0 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm8.masked-1.3.99-r41hdfd78af_9.tar.bz2  2 years and 12 days ago 191 main
conda 8.2 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm8.masked-1.3.99-r41hdfd78af_8.tar.bz2  2 years and 10 months ago 611 main
conda 8.1 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm8.masked-1.3.99-r41hdfd78af_7.tar.bz2  3 years and 3 months ago 268 main
conda 8.0 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm8.masked-1.3.99-r40hdfd78af_6.tar.bz2  3 years and 5 months ago 150 main
conda 7.7 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm8.masked-1.3.99-r40_5.tar.bz2  3 years and 10 months ago 157 main
conda 7.6 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm8.masked-1.3.99-r40_4.tar.bz2  4 years and 4 months ago 168 main
conda 7.2 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm8.masked-1.3.99-r36_3.tar.bz2  4 years and 10 months ago 190 main
conda 7.0 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm8.masked-1.3.99-r36_2.tar.bz2  5 years and 1 month ago 199 main
conda 6.5 kB | noarch/bioconductor-bsgenome.mmusculus.ucsc.mm8.masked-1.3.99-r351_0.tar.bz2  5 years and 9 months ago 241 main gcc7

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