bioconda / packages / bioconductor-bsgenome.mmusculus.ucsc.mm8.masked 1.3.99

Full genome sequences for Mus musculus (Mouse) as provided by UCSC (mm8, Feb. 2006) and stored in Biostrings objects. The sequences are the same as in BSgenome.Mmusculus.UCSC.mm8, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default.

Installers

Info: This package contains files in non-standard labels.

conda install

  • noarch  v1.3.99
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-bsgenome.mmusculus.ucsc.mm8.masked
conda install -c bioconda/label/gcc7 bioconductor-bsgenome.mmusculus.ucsc.mm8.masked

Description

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