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MOSAIC / packages / timagetk 3.0.11

TimageTK is a Python package dedicated to image processing of multicellular architectures, and is intended for biologists, modelers and computer scientists.

Installers

  • linux-64 v3.0.11
  • osx-64 v3.0.11
  • win-64 v3.0.11

conda install

To install this package run one of the following:
conda install mosaic::timagetk

Description

TimageTK (Tissue Image Toolkit) is a Python package dedicated to image processing of multicellular architectures, such as plants or animals. It is intended for biologists, modellers and computer scientists.

The package provides the following main functionalities:

  • Image Filtering: gaussian smoothing, gradient, hessian, laplacian, ...
  • Mathematical Morphology: erosion, dilation, opening, closing, hat transform, sequential filters, ...
  • Intensity Image Registration: rigid, affine and deformable registration, composition of transformations, sequence registration, multi-view fusion, ...
  • Intensity Image Segmentation: h-transform, connected-component labeling, watershed, ...
  • Visualisation: Stack browser, orthogonal views, projection maps and other GUI.
  • Batch Processing: A simple JSON-based data structure allows the easy batch processing of large data sets.

Read TimageTK documentation for more detailed information.


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