| Package Name | Access | Summary | Updated |
|---|---|---|---|
| cellcomplex | public | No Summary | 2025-09-17 |
| timagetk_geometry | public | A Python library providing computational geometry tools for 3D images of multi-cellular tissues. | 2025-09-04 |
| visu_core | public | Generic methods and tools for data visualization in VTK, Matplotlib, plotly et al. | 2025-06-16 |
| timagetk | public | Tissue Image ToolKit, a biology oriented image processing library. | 2025-05-20 |
| plantseg | public | No Summary | 2025-05-20 |
| dxtr | public | Discrete Exterior Calculus library in Python. | 2025-05-19 |
| geoinfer3 | public | Geometric inference of surface tensions and cell pressures from a 3D tissue segmentation image | 2025-03-25 |
| maps_2d | public | A python package to compute and analyze 2D maps from discrete 3D data. | 2025-03-25 |
| developmental_registration | public | A Python library providing temporal and spatial registration tools for 3D+t sequences data | 2025-03-25 |
| lpy_tools | public | A set of tools to improve L-Py functionalities. | 2025-03-25 |
| lsm3d | public | Tools for segmenting 3D images of plant tissues at multiple scales using the level set method | 2025-03-25 |
| anifilters | public | Anisotropic filters which reinforce line-structures in 2D and planar structures in 3D | 2025-03-25 |
| bvpy | public | Package providing tools to solve BVP (Boundary Value Problem) and IBVP (Initial Boundary Value Problem). | 2025-03-25 |
| sam_atlas | public | No Summary | 2025-03-25 |
| simulation_core | public | Basic abstractions for the definition of simulation models on multi-cellular tissues | 2025-03-25 |
| ctrl | public | Cell Tracking and Robust Lineaging. | 2025-03-25 |
| geomtree | public | A package for treating trees augmented with 3D geometry. | 2025-03-25 |
| sam_spaghetti | public | No Summary | 2025-03-25 |
| femtk | public | Package providing tools to run FEM simulation on multi-cellular tissues | 2025-03-25 |
| cellfem | public | Package providing tools to run FEM simulation on multi-cellular tissues | 2025-03-25 |
| tissue_paredes | public | Polarity Analysis through Robust Extraction and Density Estimation of Signal at cell-wall level | 2025-03-25 |
| cellmesh | public | Meshing interface to gmsh for PropertyTopomesh and simple geometries | 2025-03-25 |
| tissue2d | public | Package to simulate growth, division and stiffening of 2D plant tissues | 2025-03-25 |
| artificial_tissue | public | No Summary | 2025-03-25 |
| treex | public | treex is a Python library for manipulating rooted trees. The trees can be ordered or not, with or without labels on their vertices. | 2025-03-25 |
