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timagetk
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public |
TimageTK is a Python package dedicated to image processing of multicellular architectures, and is intended for biologists, modelers and computer scientists.
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2024-09-12 |
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geoinfer3
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public |
Geometric inference of surface tensions and cell pressures from a 3D tissue segmentation image
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2024-09-12 |
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cellcomplex
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public |
No Summary
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2024-05-23 |
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timagetk_geometry
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public |
A Python library providing computational geometry tools for 3D images of multi-cellular tissues.
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2024-04-26 |
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maps_2d
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public |
A python package to compute and analyze 2D maps from discrete 3D data.
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2024-04-19 |
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treex
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public |
treex is a Python library for manipulating rooted trees. The trees can be ordered or not, with or without labels on their vertices.
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2024-04-18 |
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visu_core
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public |
Generic methods and tools for data visualization in VTK, Matplotlib, plotly et al.
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2024-04-17 |
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bvpy
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public |
Package providing tools to solve BVP (Boundary Value Problem) and IBVP (Initial Boundary Value Problem).
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2024-03-26 |
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lpy_tools
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public |
A set of tools to improve L-Py functionalities.
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2024-02-16 |
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sam_atlas
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public |
No Summary
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2024-02-06 |
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ctrl
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public |
Cell Tracking and Robust Lineaging
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2023-08-03 |
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developmental_registration
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public |
A Python library providing temporal and spatial registration tools for 3D+t sequences data
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2023-06-18 |
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lsm3d
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public |
Tools for segmenting 3D images of plant tissues at multiple scales using the level set method
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2023-06-16 |
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anifilters
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public |
Anisotropic filters which reinforce line-structures in 2D and planar structures in 3D
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2023-06-16 |
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simulation_core
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public |
Basic abstractions for the definition of simulation models on multi-cellular tissues
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2023-06-16 |
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geomtree
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public |
A package for treating trees augmented with 3D geometry.
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2023-06-16 |
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sam_spaghetti
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public |
No Summary
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2023-06-16 |
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femtk
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public |
Package providing tools to run FEM simulation on multi-cellular tissues
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2023-06-16 |
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cellfem
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public |
Package providing tools to run FEM simulation on multi-cellular tissues
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2023-06-16 |
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cellmesh
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public |
Meshing interface to gmsh for PropertyTopomesh and simple geometries
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2023-06-16 |
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tissue_paredes
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public |
Polarity Analysis through Robust Extraction and Density Estimation of Signal at cell-wall level
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2023-06-16 |
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tissue2d
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public |
Package to simulate growth, division and stiffening of 2D plant tissues
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2023-06-16 |
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artificial_tissue
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public |
No Summary
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2023-06-16 |
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tissue_analysis
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public |
An Python library providing image analysis tools to extract quantitative information from 3D segmented tissue images.
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2023-06-16 |
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draco_stem
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public |
A Python library for the reconstruction of 3D meshes from segmented shoot apical meristem (SAM) tissue images.
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2023-06-16 |
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tissue_nukem_3d
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public |
A Python library for the detection and quantitative data extraction from microscopy images of cell nuclei.
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2023-06-16 |
