MOSAIC
by MOSAIC (Organization)
MOrphogenesis Simulation and Analysis In siliCo
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Packages
| Name | Latest Version | Summary | Updated | License |
|---|
| dxtr | 1.0.0 | Discrete Exterior Calculus library in Python. | Jan 9, 2026 | LGPL |
| maps_2d | 0.2.0 | A python package to compute and analyze 2D maps from discrete 3D data. | Mar 25, 2025 | LGPL-3.0-or-later |
| plantseg | 1.8.1 | — | May 20, 2025 | MIT |
| geoinfer3 | 0.1.0 | Geometric inference of surface tensions and cell pressures from a 3D tissue segmentation image | Mar 25, 2025 | LGPL-3.0-or-later |
| pyvistaqml | 0.2.5 | A Python library for seamless integration between PyVista (VTK) and modern Qt Quick (QML). | Apr 15, 2026 | LGPL-3.0-or-later |
| cellcomplex | 1.1.0 | — | Feb 18, 2026 | Cecill License |
| treex | 2.1.2 | treex is a Python library for manipulating rooted trees. The trees can be ordered or not, with or without labels on their vertices. | Mar 25, 2025 | LGPL |
| timagetk | 3.0.13 | Tissue Image ToolKit, a biology oriented image processing library. | May 20, 2025 | GPL-3.0-or-later |
| tissue_nukem_3d | 0.11.0 | A Python library for the detection and quantitative data extraction from microscopy images of cell nuclei. | Mar 25, 2025 | Cecill-C |
| visu_core | 0.2.0 | Generic methods and tools for data visualization in VTK, Matplotlib, plotly et al. | Jun 16, 2025 | LGPL-3.0-or-later |
| bvpy | default | Package providing tools to solve BVP (Boundary Value Problem) and IBVP (Initial Boundary Value Problem). | Dec 2, 2025 | LGPL |
| ctrl | 0.0.4 | Cell Tracking and Robust Lineaging. | Mar 25, 2025 | GPL-3.0-or-later |
| sam_spaghetti | 0.9.1 | — | Mar 25, 2025 | Cecill License |
| geomtree | 0.1.0 | A package for treating trees augmented with 3D geometry. | Mar 25, 2025 | cecill-c |
| draco_stem | 0.10.0 | A Python library for the reconstruction of 3D meshes from segmented shoot apical meristem (SAM) tissue images. | Mar 25, 2025 | Cecill-C |
| tissue_analysis | 0.10.0 | An Python library providing image analysis tools to extract quantitative information from 3D segmented tissue images. | Mar 25, 2025 | CECILL |
| tissue2d | 0.9.0 | Package to simulate growth, division and stiffening of 2D plant tissues | Mar 25, 2025 | Cecill-C |
| timagetk_geometry | 1.0.0 | A Python library providing computational geometry tools for 3D images of multi-cellular tissues. | Sep 4, 2025 | LGPL-3.0-or-later |
| cellmesh | 0.9.4 | Meshing interface to gmsh for PropertyTopomesh and simple geometries | Mar 25, 2025 | Cecill-C |
| sam_atlas | 0.1.0 | — | Mar 25, 2025 | Cecill License |
| lsm3d | 0.1.0 | Tools for segmenting 3D images of plant tissues at multiple scales using the level set method | Mar 25, 2025 | LGPL |
| tissue_paredes | 0.9.0 | Polarity Analysis through Robust Extraction and Density Estimation of Signal at cell-wall level | Mar 25, 2025 | Cecill-C |
| anifilters | 0.1.0 | Anisotropic filters which reinforce line-structures in 2D and planar structures in 3D | Mar 25, 2025 | CECILL-C |
| lpy_tools | 0.1.0 | A set of tools to improve L-Py functionalities. | Mar 25, 2025 | LGPL-3.0-or-later |
| femtk | 0.9.3 | Package providing tools to run FEM simulation on multi-cellular tissues | Mar 25, 2025 | Cecill-C |