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CHORD is a random forest model that uses the relative counts of somatic mutation contexts to predict homologous recombination deficiency (HRD). The primary contexts used by CHORD are deletions with flanking microhomology and 1-100kb structural duplications. Additionally, 1-100kb structural duplications are used to distinguish BRCA1-type HRD from BRCA2-type HRD.

Type Size Name Uploaded Downloads Labels
conda 156.3 kB | noarch/r-chord-2.03-r43_0.tar.bz2  2 months and 14 days ago 15 main
conda 166.3 kB | noarch/r-chord-2.00-r42_0.tar.bz2  1 year and 7 months ago 50 main
conda 165.2 kB | noarch/r-chord-2.00-r41_0.tar.bz2  3 years and 2 months ago 100 main
conda 166.1 kB | linux-64/r-chord-2.00-r40_0.tar.bz2  3 years and 6 months ago 69 main

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