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umccr / packages / r-chord 2.00

CHORD is a random forest model that uses the relative counts of somatic mutation contexts to predict homologous recombination deficiency (HRD). The primary contexts used by CHORD are deletions with flanking microhomology and 1-100kb structural duplications. Additionally, 1-100kb structural duplications are used to distinguish BRCA1-type HRD from BRCA2-type HRD.

Installers

  • linux-64 v2.00
  • noarch v2.00

conda install

To install this package run one of the following:
conda install umccr::r-chord

Description


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