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sortmerna
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public |
SortMeRNA is a biological sequence analysis tool for filtering, mapping and OTU-picking NGS reads.
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2025-03-25 |
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libzlib
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public |
Massively spiffy yet delicately unobtrusive compression library
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2025-03-25 |
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openssl
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public |
OpenSSL is an open-source implementation of the SSL and TLS protocols
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2025-03-25 |
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zlib
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public |
Massively spiffy yet delicately unobtrusive compression library
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2025-03-25 |
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libpng
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public |
PNG reference library
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2025-03-25 |
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rsem
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public |
RSEM is a software package for estimating gene and isoform expression levels from RNA-Seq data.
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2025-03-25 |
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bioconductor-ebseq
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public |
An R package for gene and isoform differential expression analysis of RNA-seq data
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2025-03-25 |
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r-blockmodeling
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public |
The package is primarly ment as an implementation of Generalized blockmodeling for valued networks. In addition, measurese of similarity or dissimilarity based on structural equivalence and regular equivalence (REGE algorithem) can be computed and partitioned matrices can be ploted.
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2025-03-25 |
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r-gplots
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public |
Various R programming tools for plotting data, including: - calculating and plotting locally smoothed summary functionals ('bandplot', 'wapply'), - enhanced versions of standard plots ('barplot2', 'boxplot2', 'heatmap.2', 'smartlegend'), - manipulating colors ('col2hex', 'colorpanel', 'redgreen', 'greenred', 'bluered', 'redblue', 'rich.colors'), - calculating and plotting two-dimensional data summaries ('ci2d', 'hist2d'), - enhanced regression diagnostic plots ('lmplot2', 'residplot'), - formula-enabled interface to stats::lowess function ('lowess'), - displaying textual data in plots ('textplot', 'sinkplot'), - plotting a matrix where each cell contains a dot whose size reflects the relative magnitude of the elements ('balloonplot'), - plotting Venn diagrams ('venn'), - displaying Open-Office style plots ('ooplot'), - plotting multiple data sets on same region, with separate axes ('overplot'), - plotting means and confidence intervals ('plotCI', 'plotmeans'), - spacing points in an x-y plot so they don't overlap ('space').
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2025-03-25 |
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ucsc-bigwigsummary
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public |
Extract summary information from a bigWig file.
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2025-03-25 |
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perl-module-build
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public |
Build and install Perl modules
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2025-03-25 |
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perl-inc-latest
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public |
use modules bundled in inc/ if they are newer than installed ones
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2025-03-25 |
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perl
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public |
The Perl programming language interpreter.
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2025-03-25 |
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bbmap
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public |
BBMap is a short read aligner, as well as various other bioinformatic tools.
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2025-03-25 |
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staden_io_lib
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public |
Staden io_lib is a library of file reading and writing code e.g. for SAM/BAM/CRAM
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2025-03-25 |
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umi_tools
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public |
Tools for dealing with Unique Molecular Identifiers (UMIs) / Random Molecular Tags (RMTs)
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2025-03-25 |
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fastp
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public |
A ultra-fast FASTQ preprocessor with full features (QC/adapters/trimming/filtering/splitting...)
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2025-03-25 |
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fq
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public |
fq is a library to generate and validate FASTQ file pairs.
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2025-03-25 |
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bioconductor-deseq2
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public |
Differential gene expression analysis based on the negative binomial distribution
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2025-03-25 |
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r-locfit
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public |
Local regression, likelihood and density estimation.
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2025-03-25 |
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bioconductor-genefilter
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public |
genefilter: methods for filtering genes from high-throughput experiments
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2025-03-25 |
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bioconductor-complexheatmap
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public |
Make Complex Heatmaps
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2025-03-25 |
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r-clue
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public |
CLUster Ensembles.
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2025-03-25 |
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bioconductor-biomart
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public |
Interface to BioMart databases (i.e. Ensembl)
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2025-03-25 |
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bioconductor-genomicfeatures
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public |
Conveniently import and query gene models
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2025-03-25 |
