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seqera / packages / bioconductor-genomicfeatures 1.46.5

Conveniently import and query gene models

Installers

  • noarch v1.46.5

conda install

To install this package run one of the following:
conda install seqera::bioconductor-genomicfeatures

Description

A set of tools and methods for making and manipulating transcript centric annotations. With these tools the user can easily download the genomic locations of the transcripts, exons and cds of a given organism, from either the UCSC Genome Browser or a BioMart database (more sources will be supported in the future). This information is then stored in a local database that keeps track of the relationship between transcripts, exons, cds and genes. Flexible methods are provided for extracting the desired features in a convenient format.


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