| Package Name | Access | Summary | Updated |
|---|---|---|---|
| deeploc2 | public | A placeholder library to install DeepLoc. | 2025-03-25 |
| tmbed | public | TMbed predicts transmembrane beta barrel and alpha helical proteins, the position and orientation of their transmembrane segments, and signal peptides. | 2025-03-25 |
| bio | public | command-line utilities to make bioinformatics explorations more enjoyable. | 2025-03-25 |
| deepredeff-py | public | A python port of the R deepredeff pipeline. | 2025-03-25 |
| r-deepredeff | public | A tool that contains trained deep learning models for predicting effector proteins. 'deepredeff' has been trained to identify effector proteins using a set of known experimentally validated effectors from either bacteria, fungi, or oomycetes. Documentation is available via several vignettes, and the paper by Kristianingsih and MacLean (2020) <doi:10.1101/2020.07.08.193250>. | 2025-03-25 |
| signalp6 | public | a placeholder library to install signalp versions 6. | 2025-03-25 |
| effectorp3 | public | Improved prediction of fungal effector proteins from secretomes with EffectorP 3.0 | 2025-03-25 |
| deepsig | public | No Summary | 2025-03-25 |
| lasagne | public | A lightweight library to build and train neural networks in Theano | 2025-03-25 |
| deeploc | public | No Summary | 2025-03-25 |
| localizer | public | No Summary | 2025-03-25 |
| signalp3 | public | No Summary | 2025-03-25 |
| signalp5 | public | No Summary | 2025-03-25 |
| effectorp1 | public | No Summary | 2025-03-25 |
| phobius | public | No Summary | 2025-03-25 |
| effectorp2 | public | No Summary | 2025-03-25 |
| apoplastp | public | No Summary | 2025-03-25 |
| targetp2 | public | No Summary | 2025-03-25 |
| signalp4 | public | No Summary | 2025-03-25 |
| tmhmm | public | No Summary | 2025-03-25 |
| predectorutils | public | Utilities to run the predector pipeline. | 2025-03-25 |
| ffindex | public | No Summary | 2025-03-25 |
