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squidpy
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public |
Squidpy - Spatial Single Cell Analysis in Python
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2023-06-16 |
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vitessce
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public |
Jupyter widget facilitating interactive visualization of spatial single-cell data with Vitessce
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2023-06-16 |
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scimap
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public |
Spatial Single-Cell Analysis Toolkit
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2023-06-16 |
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star-fusion
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public |
STAR-Fusion fusion variant caller. All dependencies required to run FusionInspector and FusionAnnotator are included.
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2023-06-16 |
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pytiff
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public |
A libtiff wrapper to read tiled tiff images
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2023-06-16 |
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mxnet-cu102
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public |
Apache MXNet is a deep learning framework designed for both efficiency and flexibility
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2023-06-16 |
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mxnet-mkl
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public |
Apache MXNet is a deep learning framework designed for both efficiency and flexibility
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2023-06-16 |
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opencv-python-headless
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public |
opencv python headless
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2023-06-16 |
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naivestates
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public |
naivestates is a label-free, cluster-free tool for inferring cell types from quantified marker expression data
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2023-06-16 |
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naivestatess
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public |
naivestates is a label-free, cluster-free tool for inferring cell types from quantified marker expression data
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2023-06-16 |
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ashlar
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public |
Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
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2023-06-16 |
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cellpose
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public |
anatomical segmentation algorithm
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2023-06-16 |
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mcmicro-ilastik
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public |
mcmicro module for training and processing large images with Ilastik
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2023-06-16 |
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basic-illumination
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public |
ImageJ BaSiC shading correction for use with Ashlar.
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2023-06-16 |
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gatk4-python
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public |
Genome Analysis Toolkit (GATK4)
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2023-06-16 |
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kbmtl
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public |
Kernalized Baysian Multi-task Transfer Learning from breast cancer cell lines
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2023-06-16 |
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aracne-ap
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public |
No Summary
|
2023-06-16 |
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epic
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public |
EPIC is a method to estimate the proportion of immune, stromal, endothelial and cancer or other cells from bulk gene expression data.
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2023-06-16 |
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tcr.diversity.analysis
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public |
No Summary
|
2023-06-16 |
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r-writexl
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public |
Zero-dependency and data frame to xlsx exporter based on 'libxlsxwriter'. Fast and no Java or Excel required.
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2023-06-16 |
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count.spikes.centos
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public |
No Summary
|
2023-06-16 |
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normalize.clonotype.counts
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public |
No Summary
|
2023-06-16 |
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count.spikes
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public |
No Summary
|
2023-06-16 |
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tcr.aggregate.qc
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public |
No Summary
|
2023-06-16 |
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decontaminate.clones
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public |
No Summary
|
2023-06-16 |
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calc.scaling.factor
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public |
No Summary
|
2023-06-16 |
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tcr.galaxy.qc
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public |
No Summary
|
2023-06-16 |
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remove.spikes
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public |
No Summary
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2023-06-16 |
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ohsu-compbio-viper
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public |
No Summary
|
2023-06-16 |
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bam-matcher
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public |
A simple tool for determining whether two BAM files contain reads sequenced from the same sample or patient by counting genotype matches at common SNPs.
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2023-06-16 |
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dryad
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public |
No Summary
|
2023-06-16 |
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intervalqc
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public |
No Summary
|
2023-06-16 |
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r-tcr
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public |
Platform for the advanced analysis of T cell receptor and Immunoglobulin repertoires data and visualisation of the analysis results.
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2023-06-16 |
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scalpel
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public |
Sensitive detection of INDELs (INsertions and DELetions)
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2023-06-16 |
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msisensor
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public |
No Summary
|
2023-06-16 |
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absolute
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public |
No Summary
|
2023-06-16 |
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lancet
|
public |
No Summary
|
2023-06-16 |
