ohsu-comp-bio
by ohsu-comp-bio (Organization)
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Packages
| Name | Latest Version | Summary | Updated | License |
|---|
| absolute | 1.0.6 | — | Mar 25, 2025 | — |
| aracne-ap | 1.0.0 | — | Mar 25, 2025 | — |
| ashlar | 1.14.0 | Alignment by Simultaneous Harmonization of Layer/Adjacency Registration | Mar 25, 2025 | MIT |
| bam-matcher | 3b4e0f7 | A simple tool for determining whether two BAM files contain reads sequenced from the same sample or patient by counting genotype matches at common SNPs. | Mar 25, 2025 | — |
| basic-illumination | 1.0.2 | ImageJ BaSiC shading correction for use with Ashlar. | Mar 25, 2025 | GNU General Public License |
| calc.scaling.factor | 1.0.0 | — | Mar 25, 2025 | — |
| cellpose | 0.6 | anatomical segmentation algorithm | Mar 25, 2025 | BSD |
| count.spikes | 1.0.0 | — | Mar 25, 2025 | — |
| count.spikes.centos | 1.0.0 | — | Mar 25, 2025 | — |
| decontaminate.clones | 1.0.0 | — | Mar 25, 2025 | — |
| dryad | 0.2.1rc2 | — | Mar 25, 2025 | MIT |
| epic | v1.1 | EPIC is a method to estimate the proportion of immune, stromal, endothelial and cancer or other cells from bulk gene expression data. | Mar 25, 2025 | — |
| gatk4-python | 4.1.4.1 | Genome Analysis Toolkit (GATK4) | Mar 25, 2025 | BSD-3-Clause |
| intervalqc | 1.0.2 | — | Mar 25, 2025 | — |
| kbmtl | 0.1.0 | Kernalized Baysian Multi-task Transfer Learning from breast cancer cell lines | Mar 25, 2025 | — |
| lancet | 1.0.6 | — | Mar 25, 2025 | — |
| mcmicro-ilastik | 1.1 | mcmicro module for training and processing large images with Ilastik | Mar 25, 2025 | — |
| msisensor | 0.2.0 | — | Mar 25, 2025 | — |
| mxnet-cu102 | 1.7.0 | Apache MXNet is a deep learning framework designed for both efficiency and flexibility | Mar 25, 2025 | Apache License 2.0 |
| mxnet-mkl | 1.6.0 | Apache MXNet is a deep learning framework designed for both efficiency and flexibility | Mar 25, 2025 | Apache License 2.0 |
| naivestates | 1.6.1 | naivestates is a label-free, cluster-free tool for inferring cell types from quantified marker expression data | Mar 25, 2025 | MIT License |
| naivestatess | 0.2 | naivestates is a label-free, cluster-free tool for inferring cell types from quantified marker expression data | Mar 25, 2025 | MIT License |
| normalize.clonotype.counts | 1.0.0 | — | Mar 25, 2025 | — |
| ohsu-compbio-viper | 1.12.0 | — | Mar 25, 2025 | — |
| opencv-python-headless | 4.5.1.48 | opencv python headless | Mar 25, 2025 | MIT |