| Package Name | Access | Summary | Updated |
|---|---|---|---|
| bcftools | public | BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF-compressed. Most commands accept VCF, bgzipped VCF and BCF with filetype detected automatically even when streaming from a pipe. Indexed VCF and BCF will work in all situations. Un-indexed VCF and BCF and streams will work in most, but not all situations. | 2025-03-25 |
| bustools | public | bustools is a program for manipulating BUS files for single cell RNA-Seq datasets. | 2025-03-25 |
| yte | public | YAML template engine | 2025-03-25 |
| samtools | public | Tools for dealing with SAM, BAM and CRAM files | 2025-03-25 |
| htslib | public | C library for high-throughput sequencing data formats. | 2025-03-25 |
| envvar-pythonpath-null | public | Unset 'PYTHONPATH' on environment activation. | 2025-03-25 |
| envvar-pythonnousersite-true | public | Set 'PYTHONNOUSERSITE=1' on environment activation. | 2025-03-25 |
| kallisto | public | Quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. | 2025-03-25 |
| r-scutrboot | public | A set of bootstrap-based statistical methods for analyzing 3\' UTR quantification data derived from single-cell RNA-sequencing. | 2025-03-25 |
| r-mervdown | public | A collection of opinionated R markdown templates the author created for biolgical data analysis and reporting. | 2025-03-25 |
| r-txcutr | public | Methods for generating truncated transcriptome annotations and indexable sequences. | 2025-03-25 |
| scimulator | public | No Summary | 2025-03-25 |
| foo-config | public | No Summary | 2023-06-16 |
