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Provides a new method for identification of clusters of genomic regions within chromosomes. Primarily, it is used for calling clusters of cis-regulatory elements (COREs). 'CREAM' uses genome-wide maps of genomic regions in the tissue or cell type of interest, such as those generated from chromatin-based assays including DNaseI, ATAC or ChIP-Seq. 'CREAM' considers proximity of the elements within chromosomes of a given sample to identify COREs in the following steps: 1) It identifies window size or the maximum allowed distance between the elements within each CORE, 2) It identifies number of elements which should be clustered as a CORE, 3) It calls COREs, 4) It filters the COREs with lowest order which does not pass the threshold considered in the approach.

Type Size Name Uploaded Downloads Labels
conda 63.5 kB | osx-64/r-cream-1.1.1-r36h6115d3f_0.tar.bz2  5 years and 2 months ago 4 main
conda 63.5 kB | linux-ppc64le/r-cream-1.1.1-r36h6115d3f_0.tar.bz2  5 years and 2 months ago 4 main
conda 63.4 kB | linux-armv7l/r-cream-1.1.1-r36h6115d3f_0.tar.bz2  5 years and 2 months ago 5 main
conda 63.5 kB | linux-armv6l/r-cream-1.1.1-r36h6115d3f_0.tar.bz2  5 years and 2 months ago 4 main
conda 63.5 kB | linux-aarch64/r-cream-1.1.1-r36h6115d3f_0.tar.bz2  5 years and 2 months ago 4 main
conda 63.3 kB | linux-64/r-cream-1.1.1-r36h6115d3f_0.tar.bz2  5 years and 2 months ago 9 main
conda 63.5 kB | linux-32/r-cream-1.1.1-r36h6115d3f_0.tar.bz2  5 years and 2 months ago 4 main
conda 63.1 kB | osx-64/r-cream-1.1.1-r35h6115d3f_0.tar.bz2  5 years and 2 months ago 4 main
conda 63.1 kB | linux-ppc64le/r-cream-1.1.1-r35h6115d3f_0.tar.bz2  5 years and 2 months ago 4 main
conda 63.1 kB | linux-armv7l/r-cream-1.1.1-r35h6115d3f_0.tar.bz2  5 years and 2 months ago 4 main
conda 63.1 kB | linux-armv6l/r-cream-1.1.1-r35h6115d3f_0.tar.bz2  5 years and 2 months ago 4 main
conda 63.1 kB | linux-aarch64/r-cream-1.1.1-r35h6115d3f_0.tar.bz2  5 years and 2 months ago 4 main
conda 63.1 kB | linux-64/r-cream-1.1.1-r35h6115d3f_0.tar.bz2  5 years and 2 months ago 4 main
conda 63.1 kB | linux-32/r-cream-1.1.1-r35h6115d3f_0.tar.bz2  5 years and 2 months ago 4 main

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