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tadlib
|
public |
A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains
|
2025-03-25 |
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mustache-hic
|
public |
Mustache is a Hi-C analysis tool
|
2025-03-25 |
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neoloop
|
public |
Predict neo-loops induced by structural variations
|
2025-03-25 |
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hic-straw
|
public |
Extract data quickly from Juicebox hic files via straw
|
2025-03-25 |
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r-cream
|
public |
Provides a new method for identification of clusters of genomic regions within chromosomes. Primarily, it is used for calling clusters of cis-regulatory elements (COREs). 'CREAM' uses genome-wide maps of genomic regions in the tissue or cell type of interest, such as those generated from chromatin-based assays including DNaseI, ATAC or ChIP-Seq. 'CREAM' considers proximity of the elements within chromosomes of a given sample to identify COREs in the following steps: 1) It identifies window size or the maximum allowed distance between the elements within each CORE, 2) It identifies number of elements which should be clustered as a CORE, 3) It calls COREs, 4) It filters the COREs with lowest order which does not pass the threshold considered in the approach.
|
2025-03-25 |
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unpaddedbase64
|
public |
Encode and decode Base64 without `=` padding
|
2025-03-25 |
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canonicaljson
|
public |
Canonical JSON
|
2025-03-25 |
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pymacaroons
|
public |
Macaroon library for Python
|
2025-03-25 |
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msgpack
|
public |
MessagePack (de)serializer.
|
2025-03-25 |
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daemonize
|
public |
Library to enable your code run as a daemon process on Unix-like systems.
|
2025-03-25 |
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r-rcartocolor
|
public |
Provides color schemes for maps and other graphics designed by 'CARTO' as described at <https://carto.com/carto-colors/>. It includes four types of palettes: aggregation, diverging, qualitative, and quantitative.
|
2025-03-25 |
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python-frontmatter
|
public |
Parse and manage posts with YAML (or other) frontmatter
|
2025-03-25 |
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higlass-python
|
public |
Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer
|
2025-03-25 |
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simple-httpfs
|
public |
A simple FUSE-based http file system. Read http files as if they were on the local filesystem.
|
2025-03-25 |
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clodius
|
public |
Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.
|
2025-03-25 |
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pybbi
|
public |
Python bindings to UCSC BigWig and BigBed library
|
2025-03-25 |
|
negspy
|
public |
Python NGS Repository
|
2025-03-25 |
|
slugid
|
public |
URL-safe base64 UUID encoder for generating 22 character slugs
|
2025-03-25 |
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pyinterval
|
public |
Interval arithmetic in Python
|
2025-03-25 |
|
pycrlibm
|
public |
Python bindings for CRlibm
|
2025-03-25 |
|
interval
|
public |
Python interval and interval set implementation.
|
2025-03-25 |
|
hicup
|
public |
HiCUP is a bioinformatics pipeline for processing Hi-C data.
|
2025-03-25 |
|
tadtree
|
public |
Hierarchical TAD caller by the Raphael Lab
|
2025-03-25 |
|
dmrseq
|
public |
No Summary
|
2025-03-25 |
|
statutils
|
public |
No Summary
|
2025-03-25 |
