|
lumpy
|
public |
The LumPy toolset provides a proof of concept for lumping for DBMF/PA/AME equations for contact processes on complex networks.
|
2024-12-19 |
|
vcfstats
|
public |
Powerful statistics for VCF files
|
2024-12-19 |
|
vcfsort
|
public |
Sorts a VCF file (for human) by chromosome.
|
2024-12-18 |
|
datar
|
public |
A Grammar of Data Manipulation in python
|
2024-12-17 |
|
simplug
|
public |
A simple plugin system for python with async hooks supported
|
2024-12-17 |
|
plotnine-prism
|
public |
Prism themes for plotnine, inspired by ggprism
|
2024-12-16 |
|
mumaxplus
|
public |
More versatile and extensible GPU-accelerated micromagnetic simulator.
|
2024-12-14 |
|
argx
|
public |
Super-charged argparse for python
|
2024-12-14 |
|
rtoml
|
public |
A better TOML library for python implemented in rust.
|
2024-12-13 |
|
python-simpleconf
|
public |
Simple configuration management with python.
|
2024-12-12 |
|
sniffles2-plot
|
public |
Visualizer tool for plot generating
|
2024-10-25 |
|
hcc-jupyter-kernels
|
public |
Jupyter kernelspec files for HCC resources
|
2024-10-18 |
|
compass-cplex
|
public |
In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes.
|
2024-09-13 |
|
cnvcaller
|
public |
CNVcaller is designed to detect copy number variation using sequencing data from populations.
|
2024-08-22 |
|
gsufsort
|
public |
Building suffix arrays, LCP-arrays and BWTs for string collections.
|
2024-08-05 |
|
biser
|
public |
Fast Characterization of Segmental Duplication Structure in Multiple Genome Assemblies.
|
2024-07-31 |
|
seq
|
public |
Seq — the bioinformatics module for Codon.
|
2024-07-30 |
|
codon
|
public |
A high-performance, zero-overhead, extensible Python compiler using LLVM.
|
2024-07-30 |
|
duo-client
|
public |
Reference client for Duo Security APIs
|
2024-07-29 |
|
freesasa-cli
|
public |
Calculate solvent accessible surface areas of proteins
|
2024-07-25 |
|
juicer
|
public |
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments.
|
2024-07-24 |
|
autodock-gpu
|
public |
AutoDock for GPUs using OpenCL.
|
2024-07-10 |
|
cudatoolkit
|
public |
NVIDIA CUDA Toolkit
|
2024-07-10 |
|
afni
|
public |
AFNI is a suite of programs for looking at and analyzing 3D brain images.
|
2024-07-03 |
|
mro
|
public |
Microsoft R Open is the enhanced distribution of R from Microsoft Corporation.
|
2024-07-03 |
|
tensorflow-cpucompat
|
public |
Computation using data flow graphs for scalable machine learning.
|
2024-07-03 |
|
dorado-gpu
|
public |
Dorado is a high-performance, easy-to-use, open source basecaller for Oxford Nanopore reads.
|
2024-06-26 |
|
dorado
|
public |
Dorado is a high-performance, easy-to-use, open source basecaller for Oxford Nanopore reads.
|
2024-06-26 |
|
mrtrix3tissue
|
public |
MRtrix3Tissue adds capabilities for 3-Tissue CSD modelling and analysis to a complete version of MRtrix3.
|
2024-06-21 |
|
modflow-2005
|
public |
Three-dimensional finite-difference ground-water flow model.
|
2024-06-14 |
|
poplddecay
|
public |
Fast and effective tool for linkage disequilibrium decay analysis.
|
2024-05-17 |
|
xcrysden
|
public |
XCrySDen is a crystalline and molecular structure visualisation program aiming at display of isosurfaces and contours, which can be superimposed on crystalline structures and interactively rotated and manipulated.
|
2024-05-14 |
|
tensorboard-plugin-profile
|
public |
A profiling and performance analysis tool for TensorFlow.
|
2024-05-10 |
|
gviz-api
|
public |
Python API for Google Visualization
|
2024-05-10 |
|
togl
|
public |
A Tcl/Tk widget for OpenGL rendering.
|
2024-05-07 |
|
boa-bacfinder
|
public |
Find bacteriocins in bacterial genomes
|
2024-04-28 |
|
deepemhancer
|
public |
Deep learning for cryo-EM maps post-processing.
|
2024-04-25 |
|
tpg
|
public |
Toy Parser Generator is a lexical and syntactic parser generator for Python.
|
2024-04-24 |
|
pysages
|
public |
Python Suite for Advanced General Ensemble Simulations.
|
2024-04-23 |
|
dssp
|
public |
Application to assign secondary structure to proteins.
|
2024-04-02 |
|
libmcfp
|
public |
A header only library that can collect configuration options from command line arguments and configuration files.
|
2024-04-01 |
|
psipred
|
public |
The PSIPRED Workbench provides a range of protein structure prediction methods.
|
2024-03-27 |
|
revbayes
|
public |
Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language.
|
2024-02-29 |
|
consurf
|
public |
Stand Alone version of ConSurf
|
2024-01-18 |
|
jmodeltest
|
public |
jModelTest is a tool to carry out statistical selection of best-fit models of nucleotide substitution.
|
2024-01-04 |
|
gurobi-matlab
|
public |
MATLAB files for Gurobi optimizer.
|
2023-12-21 |
|
prottest3
|
public |
ProtTest is a bioinformatic tool for the selection of best-fit models of aminoacid replacement for the data at hand.
|
2023-12-20 |
|
rate4site
|
public |
Rate4Site is a program for detecting conserved amino-acid sites by computing the relative evolutionary rate for each site in the multiple sequence alignment (MSA)..
|
2023-12-20 |
|
subversion
|
public |
Enterprise-class centralized version control for the masses
|
2023-08-08 |
|
ashs
|
public |
ASHS is software for automatic segmentation of the medial temporal lobe (MTL) substructures from brain MRI scans.
|
2023-08-01 |
