| Package Name | Access | Summary | Updated |
|---|---|---|---|
| isonclust3 | public | De novo clustering of long transcript reads into genes. | 2025-07-07 |
| npinv | public | an accurate tool for detecting and genotyping inversion using multiple alignment long reads | 2025-06-12 |
| qupath | public | QuPath is open source software for bioimage analysis. | 2025-05-11 |
| hcc-jupyter-kernels | public | Jupyter kernelspec files for HCC resources | 2025-04-15 |
| julia | public | A high-performance dynamic programming language for data science | 2025-04-13 |
| sequeltools | public | A suite of tools for working with PacBio Sequel raw sequence data. | 2025-03-26 |
| deepmriprep | public | Neural network-based preprocessing of MRI data. Prepping brain images in seconds. | 2025-03-25 |
| torchreg | public | Lightweight image registration library using PyTorch | 2025-03-25 |
| deepbet | public | Fast brain extraction using neural networks | 2025-03-25 |
| fill-voids | public | Fill voids in 3D binary images fast. | 2025-03-25 |
| fpocket | public | fpocket is a very fast open source protein pocket detection algorithm based on Voronoi tessellation. | 2025-03-25 |
| sequencetubemap | public | Displays multiple genomic sequences in the form of a tube map. | 2025-03-25 |
| lumpy | public | The LumPy toolset provides a proof of concept for lumping for DBMF/PA/AME equations for contact processes on complex networks. | 2025-03-25 |
| vcfstats | public | Powerful statistics for VCF files | 2025-03-25 |
| vcfsort | public | Sorts a VCF file (for human) by chromosome. | 2025-03-25 |
| datar | public | A Grammar of Data Manipulation in python | 2025-03-25 |
| simplug | public | A simple plugin system for python with async hooks supported | 2025-03-25 |
| plotnine-prism | public | Prism themes for plotnine, inspired by ggprism | 2025-03-25 |
| mumaxplus | public | More versatile and extensible GPU-accelerated micromagnetic simulator. | 2025-03-25 |
| argx | public | Super-charged argparse for python | 2025-03-25 |
| rtoml | public | A better TOML library for python implemented in rust. | 2025-03-25 |
| python-simpleconf | public | Simple configuration management with python. | 2025-03-25 |
| sniffles2-plot | public | Visualizer tool for plot generating | 2025-03-25 |
| gsufsort | public | Building suffix arrays, LCP-arrays and BWTs for string collections. | 2025-03-25 |
| biser | public | Fast Characterization of Segmental Duplication Structure in Multiple Genome Assemblies. | 2025-03-25 |
