| Package Name | Access | Summary | Updated |
|---|---|---|---|
| grch37-giab-na12878 | public | Truth sets from Genome in a Bottle for NA12878 -- http://genomeinabottle.org/ Removes mitochondrial chromosome to avoid comparisons there | 2025-03-25 |
| grch37-ga4gh-problem-regions | public | GA4GH problematic region files: https://drive.google.com/folderview?id=0B7Ao1qqJJDHQUjVIN3liUUZNWjg&usp=sharing#list | 2025-03-25 |
| grch37-dream-syn4 | public | Truth sets from the DREAM genomic challenge 4 https://www.synapse.org/#!Synapse:syn312572/wiki/62018 Originally retrieved from https://www.synapse.org/#!Synapse:syn2177211 and prepared with this script: https://github.com/chapmanb/bcbio-nextgen/blob/master/scripts/utils/format_dream_truthset.py | 2025-03-25 |
| grch37-dream-syn3 | public | Truth sets from the DREAM genomic challenge 3 https://www.synapse.org/#!Synapse:syn312572/wiki/62018 Originally retrieved from https://www.synapse.org/#!Synapse:syn2177211 and prepared with this script: https://github.com/chapmanb/bcbio-nextgen/blob/master/scripts/utils/format_dream_truthset.py | 2025-03-25 |
| grch37-dbsnp | public | No Summary | 2025-03-25 |
| grch37-dbnsfp | public | No Summary | 2025-03-25 |
| grch37-cosmic | public | No Summary | 2025-03-25 |
| grch37-battenberg | public | Battenberg CNV caller input data: https://github.com/cancerit/cgpBattenberg | 2025-03-25 |
| grch37-ancestral | public | No Summary | 2025-03-25 |
| grch37-1000g_snps | public | No Summary | 2025-03-25 |
| grch37-1000g_omni_snps | public | No Summary | 2025-03-25 |
| canfam3-transcripts | public | Transcript, annotation and indices for RNA-seq analysis Prepared from Ensembl transcripts using: https://github.com/chapmanb/cloudbiolinux/blob/master/utils/prepare_tx_gff.py | 2025-03-25 |
| canfam3-dbsnp | public | No Summary | 2025-03-25 |
