| Package Name | Access | Summary | Updated |
|---|---|---|---|
| hg19-transcripts | public | Transcript, annotation and indices for RNA-seq analysis Prepared from Ensembl transcripts using: https://github.com/chapmanb/cloudbiolinux/blob/master/utils/prepare_tx_gff.py | 2025-03-25 |
| hg19-srnaseq | public | small RNA seq annotation from different sources | 2025-03-25 |
| hg19-qsignature | public | No Summary | 2025-03-25 |
| hg19-prioritize | public | Regions for prioritization: cancer - civic -- known cancer genes from the CIViC database - az300 -- list of 300 cancer genes of interest from AstraZeneca Oncology - az300-with-fusion -- az300 list plus known interacting fusions from FusionCatcher https://github.com/ndaniel/fusioncatcher/blob/master/bin/generate_known.py#L102 - az-cancer-panel -- az300 genes plus additional useful panel genes | 2025-03-25 |
| hg19-platinum-genome-na12878 | public | Truth sets from Illumina Platinum Genomes project http://www.illumina.com/platinumgenomes/ | 2025-03-25 |
| hg19-mills_indels | public | No Summary | 2025-03-25 |
| hg19-mig | public | Medically Interpretable Genes, compiled by Personalis: http://www.genomemedicine.com/content/pdf/s13073-015-0197-4.pdf | 2025-03-25 |
| hg19-hapmap | public | No Summary | 2025-03-25 |
| hg19-giab-na12878 | public | Truth sets from Genome in a Bottle for NA12878 -- http://genomeinabottle.org/ Converts coordinates to UCSC 'chr' style naming with sed scripts Removes mitochondrial chromosome to avoid comparisons there | 2025-03-25 |
| hg19-ga4gh-problem-regions | public | GA4GH problematic region files: https://drive.google.com/folderview?id=0B7Ao1qqJJDHQUjVIN3liUUZNWjg&usp=sharing#list | 2025-03-25 |
| hg19-dbsnp | public | No Summary | 2025-03-25 |
| hg19-dbnsfp | public | No Summary | 2025-03-25 |
| hg19-cosmic | public | No Summary | 2025-03-25 |
| hg19-battenberg | public | Battenberg CNV caller input data: https://github.com/cancerit/cgpBattenberg | 2025-03-25 |
| hg19-ancestral | public | No Summary | 2025-03-25 |
| hg19-1000g_snps | public | No Summary | 2025-03-25 |
| hg19-1000g_omni_snps | public | No Summary | 2025-03-25 |
| grch37-transcripts | public | Transcript, annotation and indices for RNA-seq analysis Prepared from Ensembl transcripts using: https://github.com/chapmanb/cloudbiolinux/blob/master/utils/prepare_tx_gff.py | 2025-03-25 |
| grch37-srnaseq | public | small RNA seq annotation from different sources | 2025-03-25 |
| grch37-radar-grch37 | public | RADAR RNA editing events: (http://www.stanford.edu/~gokulr/database/Human_AG_all_hg19_v2.txt) installs a BED file of the RADAR events, converted to GRCh37 chromosome coordinates | 2025-03-25 |
| grch37-qsignature | public | No Summary | 2025-03-25 |
| grch37-prioritize | public | Regions for prioritization: cancer - civic -- known cancer genes from the CIViC database - az300 -- list of 300 cancer genes of interest from AstraZeneca Oncology - az300-with-fusion -- az300 list plus known interacting fusions from FusionCatcher https://github.com/ndaniel/fusioncatcher/blob/master/bin/generate_known.py#L102 - az-cancer-panel -- az300 genes plus additional useful panel genes | 2025-03-25 |
| grch37-mills_indels | public | No Summary | 2025-03-25 |
| grch37-mig | public | Medically Interpretable Genes, compiled by Personalis: http://www.genomemedicine.com/content/pdf/s13073-015-0197-4.pdf | 2025-03-25 |
| grch37-hapmap | public | No Summary | 2025-03-25 |
