Single-Cell Analysis in Python. Scales to >1M cells.

copied from cf-staging / scanpy


conda install

  • noarch  v1.9.1
To install this package with conda run:
conda install -c conda-forge scanpy


Scanpy is a scalable toolkit for analyzing single-cell gene expression data built jointly with anndata. It includes preprocessing, visualization, clustering, trajectory inference and differential expression testing. The Python-based implementation efficiently deals with datasets of more than one million cells.

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