• License: BSD-3-Clause
• Home: https://scanpy.org/
• Development: https://github.com/theislab/scanpy/
• Documentation: https://scanpy.readthedocs.io/
• 72331 total downloads
• Last upload: 3 months and 14 hours ago

Description

Scanpy is a scalable toolkit for analyzing single-cell gene expression data built jointly with anndata. It includes preprocessing, visualization, clustering, trajectory inference and differential expression testing. The Python-based implementation efficiently deals with datasets of more than one million cells.