Computes the Weighted Topological Overlap with positive and negative signs (wTO) networks given a data frame containing the mRNA count/ expression/ abundance per sample, and a vector containing the interested nodes of interaction (a subset of the elements of the full data frame). It also computes the cut-off threshold or p-value based on the individuals bootstrap or the values reshuffle per individual. It also allows the construction of a consensus network, based on multiple wTO networks. The package includes a visualization tool for the networks. More about the methodology can be found at <arXiv:1711.04702>.
copied from cf-staging / r-wto
https://anaconda.org/conda-forge/r-wto/badges/version.svg
https://anaconda.org/conda-forge/r-wto/badges/latest_release_date.svg
https://anaconda.org/conda-forge/r-wto/badges/latest_release_relative_date.svg
https://anaconda.org/conda-forge/r-wto/badges/platforms.svg
https://anaconda.org/conda-forge/r-wto/badges/license.svg
https://anaconda.org/conda-forge/r-wto/badges/downloads.svg