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Facilitates easy manipulation of variant call format (VCF) data. Functions are provided to rapidly read from and write to VCF files. Once VCF data is read into R a parser function extracts matrices of data. This information can then be used for quality control or other purposes. Additional functions provide visualization of genomic data. Once processing is complete data may be written to a VCF file (*.vcf.gz). It also may be converted into other popular R objects (e.g., genlight, DNAbin). VcfR provides a link between VCF data and familiar R software.

copied from cf-staging / r-vcfr
Type Size Name Uploaded Downloads Labels
conda 1.7 MB | win-64/r-vcfr-1.15.0-r43hee0745d_1.conda  4 months and 23 days ago 201 main
conda 1.7 MB | win-64/r-vcfr-1.15.0-r44hee0745d_1.conda  4 months and 23 days ago 214 main
conda 1.6 MB | osx-64/r-vcfr-1.15.0-r44hfba2881_1.conda  4 months and 23 days ago 200 main
conda 1.6 MB | osx-64/r-vcfr-1.15.0-r43hfba2881_1.conda  4 months and 23 days ago 220 main
conda 1.7 MB | linux-64/r-vcfr-1.15.0-r43h92ba465_1.conda  4 months and 23 days ago 861 main
conda 1.7 MB | linux-64/r-vcfr-1.15.0-r44h92ba465_1.conda  4 months and 23 days ago 722 main
conda 1.7 MB | win-64/r-vcfr-1.15.0-r41h67098fc_0.conda  1 year and 5 days ago 318 main
conda 1.6 MB | osx-64/r-vcfr-1.15.0-r42hd6ad0b9_0.conda  1 year and 5 days ago 244 main
conda 1.6 MB | osx-64/r-vcfr-1.15.0-r43hd6ad0b9_0.conda  1 year and 5 days ago 295 main
conda 1.7 MB | linux-64/r-vcfr-1.15.0-r43h33b523d_0.conda  1 year and 5 days ago 1676 main
conda 1.6 MB | linux-64/r-vcfr-1.15.0-r42h33b523d_0.conda  1 year and 5 days ago 1266 main
conda 1.7 MB | win-64/r-vcfr-1.14.0-r41h67098fc_1.conda  1 year and 5 months ago 434 main
conda 1.6 MB | osx-64/r-vcfr-1.14.0-r43ha73a074_1.conda  1 year and 5 months ago 252 main
conda 1.6 MB | osx-64/r-vcfr-1.14.0-r42ha73a074_1.conda  1 year and 5 months ago 236 main
conda 1.7 MB | linux-64/r-vcfr-1.14.0-r43h33b523d_1.conda  1 year and 5 months ago 1452 main
conda 1.7 MB | linux-64/r-vcfr-1.14.0-r42h33b523d_1.conda  1 year and 5 months ago 1404 main
conda 1.7 MB | win-64/r-vcfr-1.14.0-r41h67098fc_0.conda  1 year and 10 months ago 565 main
conda 1.6 MB | osx-64/r-vcfr-1.14.0-r41h32f0767_0.conda  1 year and 10 months ago 226 main
conda 1.6 MB | osx-64/r-vcfr-1.14.0-r42h32f0767_0.conda  1 year and 10 months ago 232 main
conda 1.7 MB | linux-64/r-vcfr-1.14.0-r41h58bca29_0.conda  1 year and 10 months ago 2148 main
conda 1.7 MB | linux-64/r-vcfr-1.14.0-r42h58bca29_0.conda  1 year and 10 months ago 1711 main
conda 1.5 MB | win-64/r-vcfr-1.13.0-r41h67098fc_1.tar.bz2  2 years and 1 month ago 525 main
conda 1.5 MB | osx-64/r-vcfr-1.13.0-r41h32f0767_1.tar.bz2  2 years and 1 month ago 74 main
conda 1.5 MB | osx-64/r-vcfr-1.13.0-r42h32f0767_1.tar.bz2  2 years and 1 month ago 81 main
conda 1.5 MB | linux-64/r-vcfr-1.13.0-r41h690469d_1.tar.bz2  2 years and 1 month ago 1707 main
conda 1.5 MB | linux-64/r-vcfr-1.13.0-r42h690469d_1.tar.bz2  2 years and 1 month ago 1947 main
conda 1.6 MB | win-64/r-vcfr-1.13.0-r40h67098fc_0.tar.bz2  2 years and 4 months ago 658 main
conda 1.5 MB | win-64/r-vcfr-1.13.0-r41h67098fc_0.tar.bz2  2 years and 4 months ago 632 main
conda 1.5 MB | osx-64/r-vcfr-1.13.0-r41h3b3474e_0.tar.bz2  2 years and 4 months ago 78 main
conda 1.5 MB | osx-64/r-vcfr-1.13.0-r40h3b3474e_0.tar.bz2  2 years and 4 months ago 79 main
conda 1.5 MB | linux-64/r-vcfr-1.13.0-r40h690469d_0.tar.bz2  2 years and 4 months ago 2853 main
conda 1.5 MB | linux-64/r-vcfr-1.13.0-r41h690469d_0.tar.bz2  2 years and 4 months ago 1908 main
conda 1.8 MB | win-64/r-vcfr-1.12.0-r41h67098fc_0.tar.bz2  3 years and 6 months ago 811 main
conda 1.8 MB | win-64/r-vcfr-1.12.0-r40h67098fc_0.tar.bz2  3 years and 6 months ago 802 main
conda 1.7 MB | osx-64/r-vcfr-1.12.0-r40h49af105_0.tar.bz2  3 years and 6 months ago 143 main
conda 1.7 MB | osx-64/r-vcfr-1.12.0-r41h49af105_0.tar.bz2  3 years and 6 months ago 197 main
conda 1.8 MB | linux-64/r-vcfr-1.12.0-r41h8380222_0.tar.bz2  3 years and 6 months ago 2893 main
conda 1.8 MB | linux-64/r-vcfr-1.12.0-r40h8380222_0.tar.bz2  3 years and 6 months ago 2429 main
conda 1.8 MB | win-64/r-vcfr-1.12.0-r40h30cfbe8_0.tar.bz2  4 years and 3 months ago 1020 main
conda 1.7 MB | osx-64/r-vcfr-1.12.0-r36hb3ae1ca_0.tar.bz2  4 years and 3 months ago 325 main
conda 1.8 MB | win-64/r-vcfr-1.12.0-r36h30cfbe8_0.tar.bz2  4 years and 3 months ago 1021 main
conda 1.7 MB | osx-64/r-vcfr-1.12.0-r40hb3ae1ca_0.tar.bz2  4 years and 3 months ago 350 main
conda 1.8 MB | linux-64/r-vcfr-1.12.0-r40h8ab0226_0.tar.bz2  4 years and 3 months ago 2778 main
conda 1.7 MB | linux-64/r-vcfr-1.12.0-r36h8ab0226_0.tar.bz2  4 years and 3 months ago 3236 main
conda 1.7 MB | win-64/r-vcfr-1.10.0-r36h30cfbe8_1.tar.bz2  4 years and 7 months ago 1029 main
conda 1.8 MB | win-64/r-vcfr-1.10.0-r40h30cfbe8_1.tar.bz2  4 years and 7 months ago 1032 main
conda 1.7 MB | osx-64/r-vcfr-1.10.0-r36h85a918d_1.tar.bz2  4 years and 7 months ago 324 main
conda 1.8 MB | osx-64/r-vcfr-1.10.0-r40h85a918d_1.tar.bz2  4 years and 7 months ago 336 main
conda 1.7 MB | linux-64/r-vcfr-1.10.0-r36h8ab0226_1.tar.bz2  4 years and 7 months ago 2906 main
conda 1.8 MB | linux-64/r-vcfr-1.10.0-r40h8ab0226_1.tar.bz2  4 years and 7 months ago 2901 main

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