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Tensor Composition Analysis (TCA) allows the deconvolution of two-dimensional data (features by observations) coming from a mixture of heterogeneous sources into a three-dimensional matrix of signals (features by observations by sources). The TCA framework further allows to test the features in the data for different statistical relations with an outcome of interest while modeling source-specific effects; particularly, it allows to look for statistical relations between source-specific signals and an outcome. For example, TCA can deconvolve bulk tissue-level DNA methylation data (methylation sites by individuals) into a three-dimensional tensor of cell-type-specific methylation levels for each individual (i.e. methylation sites by individuals by cell types) and it allows to detect cell-type-specific statistical relations (associations) with phenotypes. For more details see Rahmani et al. (2019) <DOI:10.1038/s41467-019-11052-9>.

copied from cf-post-staging / r-tca
Type Size Name Uploaded Downloads Labels
conda 660.0 kB | noarch/r-tca-1.2.1-r44hc72bb7e_2.conda  6 days and 22 hours ago 45 main
conda 658.7 kB | noarch/r-tca-1.2.1-r45hc72bb7e_2.conda  6 days and 22 hours ago 39 main
conda 659.9 kB | noarch/r-tca-1.2.1-r44hc72bb7e_1.conda  1 year and 1 month ago 935 main
conda 659.8 kB | noarch/r-tca-1.2.1-r43hc72bb7e_1.conda  1 year and 1 month ago 914 main
conda 658.6 kB | noarch/r-tca-1.2.1-r43hc72bb7e_0.conda  1 year and 1 month ago 913 main

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