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Tensor Composition Analysis (TCA) allows the deconvolution of two-dimensional data (features by observations) coming from a mixture of heterogeneous sources into a three-dimensional matrix of signals (features by observations by sources). The TCA framework further allows to test the features in the data for different statistical relations with an outcome of interest while modeling source-specific effects; particularly, it allows to look for statistical relations between source-specific signals and an outcome. For example, TCA can deconvolve bulk tissue-level DNA methylation data (methylation sites by individuals) into a three-dimensional tensor of cell-type-specific methylation levels for each individual (i.e. methylation sites by individuals by cell types) and it allows to detect cell-type-specific statistical relations (associations) with phenotypes. For more details see Rahmani et al. (2019) <DOI:10.1038/s41467-019-11052-9>.

copied from cf-post-staging / r-tca
Type Size Name Uploaded Downloads Labels
conda 660.0 kB | noarch/r-tca-1.2.1-r44hc72bb7e_2.conda  6 months and 12 days ago 372 main
conda 658.7 kB | noarch/r-tca-1.2.1-r45hc72bb7e_2.conda  6 months and 12 days ago 358 main
conda 659.9 kB | noarch/r-tca-1.2.1-r44hc72bb7e_1.conda  1 year and 7 months ago 1219 main
conda 659.8 kB | noarch/r-tca-1.2.1-r43hc72bb7e_1.conda  1 year and 7 months ago 1231 main
conda 658.6 kB | noarch/r-tca-1.2.1-r43hc72bb7e_0.conda  1 year and 7 months ago 1223 main

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