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A normalization method for single-cell UMI count data using a variance stabilizing transformation. The transformation is based on a negative binomial regression model with regularized parameters. As part of the same regression framework, this package also provides functions for batch correction, and data correction. See Hafemeister and Satija 2019 <doi:10.1101/576827> for more details.

copied from cf-post-staging / r-sctransform
Type Size Name Uploaded Downloads Labels
conda 493.8 kB | win-64/r-sctransform-0.4.2-r44hec15cfb_0.conda  3 months and 17 days ago 113 main
conda 505.9 kB | win-64/r-sctransform-0.4.2-r43hec15cfb_0.conda  3 months and 17 days ago 73 main
conda 513.9 kB | osx-arm64/r-sctransform-0.4.2-r43hb5716f2_0.conda  3 months and 17 days ago 147 main
conda 506.2 kB | osx-64/r-sctransform-0.4.2-r44h8d9e291_0.conda  3 months and 17 days ago 126 main
conda 501.3 kB | linux-aarch64/r-sctransform-0.4.2-r44h36ba1ed_0.conda  3 months and 17 days ago 113 main
conda 513.4 kB | linux-aarch64/r-sctransform-0.4.2-r43h36ba1ed_0.conda  3 months and 17 days ago 153 main
conda 502.0 kB | osx-arm64/r-sctransform-0.4.2-r44hb5716f2_0.conda  3 months and 17 days ago 289 main
conda 517.6 kB | osx-64/r-sctransform-0.4.2-r43h8d9e291_0.conda  3 months and 17 days ago 120 main
conda 519.2 kB | linux-64/r-sctransform-0.4.2-r43hc2d650c_0.conda  3 months and 17 days ago 4231 main
conda 508.2 kB | linux-ppc64le/r-sctransform-0.4.2-r44he940c2a_0.conda  3 months and 17 days ago 13 main
conda 519.8 kB | linux-ppc64le/r-sctransform-0.4.2-r43he940c2a_0.conda  3 months and 17 days ago 17 main
conda 506.7 kB | linux-64/r-sctransform-0.4.2-r44hc2d650c_0.conda  3 months and 17 days ago 4822 main

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