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conda-forge / packages / r-sctransform

A normalization method for single-cell UMI count data using a variance stabilizing transformation. The transformation is based on a negative binomial regression model with regularized parameters. As part of the same regression framework, this package also provides functions for batch correction, and data correction. See Hafemeister and Satija 2019 <doi:10.1101/576827> for more details.

copied from cf-staging / r-sctransform

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Type Size Name Uploaded Downloads Labels
conda 417.4 kB | win-64/r-sctransform-0.3.1-r40h096a1c2_0.tar.bz2  4 years and 4 months ago 994 main
conda 415.1 kB | linux-64/r-sctransform-0.3.1-r40h1b71b39_0.tar.bz2  4 years and 4 months ago 2730 main
conda 418.2 kB | osx-64/r-sctransform-0.3.1-r40h342fd00_0.tar.bz2  4 years and 4 months ago 305 main
conda 416.2 kB | linux-64/r-sctransform-0.3.1-r36h1b71b39_0.tar.bz2  4 years and 4 months ago 2967 main
conda 418.7 kB | osx-64/r-sctransform-0.3.1-r36h342fd00_0.tar.bz2  4 years and 4 months ago 327 main
conda 381.0 kB | win-64/r-sctransform-0.3-r40h796a38f_0.tar.bz2  4 years and 5 months ago 995 main
conda 381.6 kB | win-64/r-sctransform-0.3-r36h796a38f_0.tar.bz2  4 years and 5 months ago 1015 main
conda 374.0 kB | linux-64/r-sctransform-0.3-r40h0357c0b_0.tar.bz2  4 years and 5 months ago 3048 main
conda 373.6 kB | linux-64/r-sctransform-0.3-r36h0357c0b_0.tar.bz2  4 years and 5 months ago 3158 main
conda 371.3 kB | osx-64/r-sctransform-0.3-r36h710217c_0.tar.bz2  4 years and 5 months ago 360 main
conda 370.9 kB | osx-64/r-sctransform-0.3-r40h710217c_0.tar.bz2  4 years and 5 months ago 336 main
conda 344.0 kB | win-64/r-sctransform-0.2.1-r36h796a38f_1.tar.bz2  4 years and 9 months ago 1048 main
conda 343.4 kB | win-64/r-sctransform-0.2.1-r40h796a38f_1.tar.bz2  4 years and 9 months ago 1041 main
conda 334.4 kB | osx-64/r-sctransform-0.2.1-r36hc5da6b9_1.tar.bz2  4 years and 9 months ago 493 main
conda 333.7 kB | osx-64/r-sctransform-0.2.1-r40hc5da6b9_1.tar.bz2  4 years and 9 months ago 376 main
conda 335.7 kB | linux-64/r-sctransform-0.2.1-r40h0357c0b_1.tar.bz2  4 years and 9 months ago 3325 main
conda 336.2 kB | linux-64/r-sctransform-0.2.1-r36h0357c0b_1.tar.bz2  4 years and 9 months ago 3784 main
conda 340.0 kB | win-64/r-sctransform-0.2.1-r35h796a38f_0.tar.bz2  5 years and 2 months ago 1151 main cf202003
conda 341.9 kB | win-64/r-sctransform-0.2.1-r36h796a38f_0.tar.bz2  5 years and 2 months ago 1193 main cf202003
conda 330.4 kB | osx-64/r-sctransform-0.2.1-r36hc5da6b9_0.tar.bz2  5 years and 2 months ago 520 main cf202003
conda 328.9 kB | osx-64/r-sctransform-0.2.1-r35hc5da6b9_0.tar.bz2  5 years and 2 months ago 428 main cf202003
conda 331.3 kB | linux-64/r-sctransform-0.2.1-r35h0357c0b_0.tar.bz2  5 years and 2 months ago 3898 main cf202003
conda 332.6 kB | linux-64/r-sctransform-0.2.1-r36h0357c0b_0.tar.bz2  5 years and 2 months ago 4189 main cf202003
conda 328.6 kB | win-64/r-sctransform-0.2.0-r36h796a38f_1.tar.bz2  5 years and 7 months ago 1405 main cf202003
conda 326.9 kB | win-64/r-sctransform-0.2.0-r35h796a38f_1.tar.bz2  5 years and 7 months ago 1385 main cf202003
conda 319.3 kB | osx-64/r-sctransform-0.2.0-r36hf99fc2c_1.tar.bz2  5 years and 7 months ago 501 main cf202003
conda 357.1 kB | osx-64/r-sctransform-0.2.0-r35hf99fc2c_1.tar.bz2  5 years and 7 months ago 434 main cf202003
conda 318.9 kB | linux-64/r-sctransform-0.2.0-r35h0357c0b_1.tar.bz2  5 years and 7 months ago 4143 main cf202003
conda 320.3 kB | linux-64/r-sctransform-0.2.0-r36h0357c0b_1.tar.bz2  5 years and 7 months ago 4428 main cf202003
conda 326.9 kB | win-64/r-sctransform-0.2.0-r351h6115d3f_0.tar.bz2  5 years and 10 months ago 1471 main cf202003
conda 356.5 kB | osx-64/r-sctransform-0.2.0-r351hf99fc2c_0.tar.bz2  5 years and 10 months ago 490 main cf202003
conda 319.0 kB | linux-64/r-sctransform-0.2.0-r351h0357c0b_0.tar.bz2  5 years and 10 months ago 4647 main cf202003
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