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conda-forge / packages / r-sctransform

A normalization method for single-cell UMI count data using a variance stabilizing transformation. The transformation is based on a negative binomial regression model with regularized parameters. As part of the same regression framework, this package also provides functions for batch correction, and data correction. See Hafemeister and Satija 2019 <doi:10.1101/576827> for more details.

copied from cf-post-staging / r-sctransform

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Type Size Name Uploaded Downloads Labels
conda 569.6 kB | linux-64/r-sctransform-0.3.4-r41hef8c1a7_0.tar.bz2  3 years and 8 months ago 4972 main
conda 569.5 kB | linux-64/r-sctransform-0.3.4-r40hef8c1a7_0.tar.bz2  3 years and 8 months ago 13257 main
conda 557.5 kB | win-64/r-sctransform-0.3.3-r41h8b0e7af_1.tar.bz2  4 years and 3 months ago 859 main
conda 569.6 kB | win-64/r-sctransform-0.3.3-r40h8b0e7af_1.tar.bz2  4 years and 3 months ago 754 main
conda 565.9 kB | osx-64/r-sctransform-0.3.3-r40h5e60f97_1.tar.bz2  4 years and 3 months ago 243 main
conda 565.9 kB | osx-64/r-sctransform-0.3.3-r41h5e60f97_1.tar.bz2  4 years and 3 months ago 502 main
conda 572.7 kB | linux-64/r-sctransform-0.3.3-r40hf361f1a_1.tar.bz2  4 years and 3 months ago 6519 main
conda 572.7 kB | linux-64/r-sctransform-0.3.3-r41hf361f1a_1.tar.bz2  4 years and 3 months ago 9699 main
conda 569.6 kB | win-64/r-sctransform-0.3.3-r40hfb8a20d_0.tar.bz2  4 years and 3 months ago 743 main
conda 557.1 kB | win-64/r-sctransform-0.3.3-r41hfb8a20d_0.tar.bz2  4 years and 3 months ago 749 main
conda 566.0 kB | osx-64/r-sctransform-0.3.3-r40he434708_0.tar.bz2  4 years and 3 months ago 115 main
conda 565.8 kB | osx-64/r-sctransform-0.3.3-r41he434708_0.tar.bz2  4 years and 3 months ago 118 main
conda 572.4 kB | linux-64/r-sctransform-0.3.3-r40h78ebb21_0.tar.bz2  4 years and 3 months ago 2988 main
conda 572.5 kB | linux-64/r-sctransform-0.3.3-r41h78ebb21_0.tar.bz2  4 years and 3 months ago 3088 main
conda 441.6 kB | win-64/r-sctransform-0.3.2-r41hfb8a20d_1.tar.bz2  4 years and 11 months ago 878 main
conda 454.9 kB | osx-64/r-sctransform-0.3.2-r41he434708_1.tar.bz2  4 years and 11 months ago 432 main
conda 455.9 kB | linux-64/r-sctransform-0.3.2-r41h78ebb21_1.tar.bz2  4 years and 11 months ago 5359 main
conda 451.2 kB | win-64/r-sctransform-0.3.2-r36hfb8a20d_1.tar.bz2  4 years and 11 months ago 975 main
conda 450.2 kB | win-64/r-sctransform-0.3.2-r40hfb8a20d_1.tar.bz2  4 years and 11 months ago 890 main
conda 455.5 kB | osx-64/r-sctransform-0.3.2-r36he434708_1.tar.bz2  4 years and 11 months ago 532 main
conda 454.8 kB | osx-64/r-sctransform-0.3.2-r40he434708_1.tar.bz2  4 years and 11 months ago 335 main
conda 456.8 kB | linux-64/r-sctransform-0.3.2-r36h78ebb21_1.tar.bz2  4 years and 11 months ago 8995 main
conda 455.7 kB | linux-64/r-sctransform-0.3.2-r40h78ebb21_1.tar.bz2  4 years and 11 months ago 4738 main
conda 450.1 kB | win-64/r-sctransform-0.3.2-r40he3aa7d2_0.tar.bz2  5 years and 4 months ago 975 main
conda 450.3 kB | win-64/r-sctransform-0.3.2-r36he3aa7d2_0.tar.bz2  5 years and 4 months ago 961 main
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