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conda-forge / packages / r-sctransform

A normalization method for single-cell UMI count data using a variance stabilizing transformation. The transformation is based on a negative binomial regression model with regularized parameters. As part of the same regression framework, this package also provides functions for batch correction, and data correction. See Hafemeister and Satija 2019 <doi:10.1101/576827> for more details.

copied from cf-post-staging / r-sctransform

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Type Size Name Uploaded Downloads Labels
conda 572.4 kB | linux-64/r-sctransform-0.3.3-r40h78ebb21_0.tar.bz2  3 years and 10 months ago 2687 main
conda 572.5 kB | linux-64/r-sctransform-0.3.3-r41h78ebb21_0.tar.bz2  3 years and 10 months ago 2771 main
conda 441.6 kB | win-64/r-sctransform-0.3.2-r41hfb8a20d_1.tar.bz2  4 years and 5 months ago 864 main
conda 454.9 kB | osx-64/r-sctransform-0.3.2-r41he434708_1.tar.bz2  4 years and 5 months ago 420 main
conda 455.9 kB | linux-64/r-sctransform-0.3.2-r41h78ebb21_1.tar.bz2  4 years and 5 months ago 5034 main
conda 451.2 kB | win-64/r-sctransform-0.3.2-r36hfb8a20d_1.tar.bz2  4 years and 6 months ago 940 main
conda 450.2 kB | win-64/r-sctransform-0.3.2-r40hfb8a20d_1.tar.bz2  4 years and 6 months ago 875 main
conda 455.5 kB | osx-64/r-sctransform-0.3.2-r36he434708_1.tar.bz2  4 years and 6 months ago 510 main
conda 454.8 kB | osx-64/r-sctransform-0.3.2-r40he434708_1.tar.bz2  4 years and 6 months ago 321 main
conda 456.8 kB | linux-64/r-sctransform-0.3.2-r36h78ebb21_1.tar.bz2  4 years and 6 months ago 8476 main
conda 455.7 kB | linux-64/r-sctransform-0.3.2-r40h78ebb21_1.tar.bz2  4 years and 6 months ago 4409 main
conda 450.1 kB | win-64/r-sctransform-0.3.2-r40he3aa7d2_0.tar.bz2  4 years and 11 months ago 961 main
conda 450.3 kB | win-64/r-sctransform-0.3.2-r36he3aa7d2_0.tar.bz2  4 years and 11 months ago 947 main
conda 454.6 kB | linux-64/r-sctransform-0.3.2-r40h34e6507_0.tar.bz2  4 years and 11 months ago 4455 main
conda 455.0 kB | osx-64/r-sctransform-0.3.2-r40hf695eb6_0.tar.bz2  4 years and 11 months ago 377 main
conda 455.6 kB | osx-64/r-sctransform-0.3.2-r36hf695eb6_0.tar.bz2  4 years and 11 months ago 395 main
conda 455.8 kB | linux-64/r-sctransform-0.3.2-r36h34e6507_0.tar.bz2  4 years and 11 months ago 3933 main
conda 417.9 kB | win-64/r-sctransform-0.3.1-r36he3aa7d2_1.tar.bz2  5 years and 19 days ago 978 main
conda 417.3 kB | win-64/r-sctransform-0.3.1-r40he3aa7d2_1.tar.bz2  5 years and 19 days ago 970 main
conda 418.0 kB | osx-64/r-sctransform-0.3.1-r40hc5079d1_1.tar.bz2  5 years and 19 days ago 317 main
conda 418.7 kB | osx-64/r-sctransform-0.3.1-r36hc5079d1_1.tar.bz2  5 years and 19 days ago 345 main
conda 415.4 kB | linux-64/r-sctransform-0.3.1-r40hdb2a40c_1.tar.bz2  5 years and 19 days ago 3451 main
conda 416.0 kB | linux-64/r-sctransform-0.3.1-r36hdb2a40c_1.tar.bz2  5 years and 19 days ago 3600 main
conda 417.4 kB | win-64/r-sctransform-0.3.1-r36h096a1c2_0.tar.bz2  5 years and 1 month ago 996 main
conda 417.4 kB | win-64/r-sctransform-0.3.1-r40h096a1c2_0.tar.bz2  5 years and 1 month ago 1015 main
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