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R implementation of generalized survival models (GSMs), smooth accelerated failure time (AFT) models and Markov multi-state models. For the GSMs, g(S(t|x))=eta(t,x) for a link function g, survival S at time t with covariates x and a linear predictor eta(t,x). The main assumption is that the time effect(s) are smooth <doi:10.1177/0962280216664760>. For fully parametric models with natural splines, this re-implements Stata's 'stpm2' function, which are flexible parametric survival models developed by Royston and colleagues. We have extended the parametric models to include any smooth parametric smoothers for time. We have also extended the model to include any smooth penalized smoothers from the 'mgcv' package, using penalized likelihood. These models include left truncation, right censoring, interval censoring, gamma frailties and normal random effects <doi:10.1002/sim.7451>. For the smooth AFTs, S(t|x) = S_0(t*eta(t,x)), where the baseline survival function S_0(t)=exp(-exp(eta_0(t))) is modelled for natural splines for eta_0, and the time-dependent cumulative acceleration factor eta(t,x)=\int_0^t exp(eta_1(u,x)) du for log acceleration factor eta_1(u,x). The Markov multi-state models allow for a range of models with smooth transitions to predict transition probabilities, length of stay, utilities and costs, with differences, ratios and standardisation.

copied from cf-staging / r-rstpm2
Type Size Name Uploaded Downloads Labels
conda 2.2 MB | win-64/r-rstpm2-1.5.9-r41h30befbe_0.conda  2 years and 2 months ago 899 main
conda 2.2 MB | osx-64/r-rstpm2-1.5.9-r41hcfa4a20_0.conda  2 years and 2 months ago 419 main
conda 2.2 MB | osx-64/r-rstpm2-1.5.9-r42hcfa4a20_0.conda  2 years and 2 months ago 420 main
conda 2.2 MB | linux-64/r-rstpm2-1.5.9-r41h6d9afb5_0.conda  2 years and 2 months ago 1870 main
conda 2.2 MB | linux-64/r-rstpm2-1.5.9-r42h6d9afb5_0.conda  2 years and 2 months ago 1897 main
conda 2.4 MB | win-64/r-rstpm2-1.5.8-r41h30befbe_0.tar.bz2  2 years and 5 months ago 521 main
conda 2.5 MB | osx-64/r-rstpm2-1.5.8-r42hcfa4a20_0.tar.bz2  2 years and 5 months ago 70 main
conda 2.5 MB | osx-64/r-rstpm2-1.5.8-r41hcfa4a20_0.tar.bz2  2 years and 5 months ago 67 main
conda 2.4 MB | linux-64/r-rstpm2-1.5.8-r42hbb4fff6_0.tar.bz2  2 years and 5 months ago 1782 main
conda 2.4 MB | linux-64/r-rstpm2-1.5.8-r41hbb4fff6_0.tar.bz2  2 years and 5 months ago 1822 main
conda 2.3 MB | win-64/r-rstpm2-1.5.7-r41h30befbe_1.tar.bz2  2 years and 5 months ago 531 main
conda 2.5 MB | osx-64/r-rstpm2-1.5.7-r42hcfa4a20_1.tar.bz2  2 years and 5 months ago 69 main
conda 2.4 MB | linux-64/r-rstpm2-1.5.7-r42hbb4fff6_1.tar.bz2  2 years and 5 months ago 1875 main
conda 2.4 MB | linux-64/r-rstpm2-1.5.7-r41hbb4fff6_1.tar.bz2  2 years and 5 months ago 1828 main
conda 2.4 MB | win-64/r-rstpm2-1.5.7-r40h30befbe_0.tar.bz2  2 years and 8 months ago 634 main
conda 2.3 MB | win-64/r-rstpm2-1.5.7-r41h30befbe_0.tar.bz2  2 years and 8 months ago 635 main
conda 2.5 MB | osx-64/r-rstpm2-1.5.7-r41hfa0d438_0.tar.bz2  2 years and 8 months ago 73 main
conda 2.5 MB | osx-64/r-rstpm2-1.5.7-r40hfa0d438_0.tar.bz2  2 years and 8 months ago 73 main
conda 2.4 MB | linux-64/r-rstpm2-1.5.7-r41hbb4fff6_0.tar.bz2  2 years and 8 months ago 2003 main
conda 2.4 MB | linux-64/r-rstpm2-1.5.7-r40hbb4fff6_0.tar.bz2  2 years and 8 months ago 2015 main
conda 2.4 MB | win-64/r-rstpm2-1.5.6-r40h438b884_0.tar.bz2  2 years and 10 months ago 689 main
conda 2.3 MB | win-64/r-rstpm2-1.5.6-r41h438b884_0.tar.bz2  2 years and 10 months ago 683 main
conda 2.5 MB | osx-64/r-rstpm2-1.5.6-r40h8a37116_0.tar.bz2  2 years and 10 months ago 79 main
conda 2.4 MB | osx-64/r-rstpm2-1.5.6-r41h8a37116_0.tar.bz2  2 years and 10 months ago 83 main
conda 2.4 MB | linux-64/r-rstpm2-1.5.6-r41he9dea17_0.tar.bz2  2 years and 10 months ago 2099 main
conda 2.4 MB | linux-64/r-rstpm2-1.5.6-r40he9dea17_0.tar.bz2  2 years and 10 months ago 2100 main
conda 2.4 MB | win-64/r-rstpm2-1.5.5-r40h438b884_0.tar.bz2  2 years and 11 months ago 700 main
conda 2.3 MB | win-64/r-rstpm2-1.5.5-r41h438b884_0.tar.bz2  2 years and 11 months ago 692 main
conda 2.5 MB | osx-64/r-rstpm2-1.5.5-r40h669364a_0.tar.bz2  2 years and 11 months ago 77 main
conda 2.5 MB | osx-64/r-rstpm2-1.5.5-r41h669364a_0.tar.bz2  2 years and 11 months ago 76 main
conda 2.4 MB | linux-64/r-rstpm2-1.5.5-r40he9dea17_0.tar.bz2  2 years and 11 months ago 2144 main
conda 2.4 MB | linux-64/r-rstpm2-1.5.5-r41he9dea17_0.tar.bz2  2 years and 11 months ago 2117 main
conda 2.3 MB | win-64/r-rstpm2-1.5.2-r41h438b884_0.tar.bz2  3 years and 9 months ago 801 main
conda 2.4 MB | osx-64/r-rstpm2-1.5.2-r41hb984973_0.tar.bz2  3 years and 9 months ago 143 main
conda 2.4 MB | linux-64/r-rstpm2-1.5.2-r41h2f3b0b6_0.tar.bz2  3 years and 9 months ago 2448 main
conda 2.3 MB | win-64/r-rstpm2-1.5.2-r40h438b884_0.tar.bz2  3 years and 11 months ago 857 main
conda 2.3 MB | win-64/r-rstpm2-1.5.2-r36h438b884_0.tar.bz2  3 years and 11 months ago 861 main
conda 2.3 MB | osx-64/r-rstpm2-1.5.2-r36hb984973_0.tar.bz2  3 years and 11 months ago 194 main
conda 2.4 MB | osx-64/r-rstpm2-1.5.2-r40hb984973_0.tar.bz2  3 years and 11 months ago 204 main
conda 2.4 MB | linux-64/r-rstpm2-1.5.2-r40h2f3b0b6_0.tar.bz2  3 years and 11 months ago 2522 main
conda 2.3 MB | linux-64/r-rstpm2-1.5.2-r36h2f3b0b6_0.tar.bz2  3 years and 11 months ago 2546 main
conda 2.9 MB | osx-64/r-rstpm2-1.5.1-r36hb984973_0.tar.bz2  3 years and 11 months ago 199 main
conda 2.8 MB | win-64/r-rstpm2-1.5.1-r36h438b884_0.tar.bz2  3 years and 11 months ago 879 main
conda 2.8 MB | win-64/r-rstpm2-1.5.1-r40h438b884_0.tar.bz2  3 years and 11 months ago 870 main
conda 2.9 MB | osx-64/r-rstpm2-1.5.1-r40hb984973_0.tar.bz2  3 years and 11 months ago 189 main
conda 2.8 MB | linux-64/r-rstpm2-1.5.1-r36h2f3b0b6_0.tar.bz2  3 years and 11 months ago 2501 main
conda 2.9 MB | linux-64/r-rstpm2-1.5.1-r40h2f3b0b6_0.tar.bz2  3 years and 11 months ago 2510 main

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