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Reference-free method for conducting EWAS while deconvoluting DNA methylation arising as mixtures of cell types. The older method (Houseman et al., 2014,<doi:10.1093/bioinformatics/btu029>) is similar to surrogate variable analysis (SVA and ISVA), except that it makes additional use of a biological mixture assumption. The newer method (Houseman et al., 2016, <doi:10.1186/s12859-016-1140-4>) is similar to non-negative matrix factorization, with additional constraints and additional utilities.

copied from cf-staging / r-reffreeewas
Type Size Name Uploaded Downloads Labels
conda 3.2 MB | noarch/r-reffreeewas-2.2-r44hc72bb7e_4.conda  7 months and 23 days ago 627 main
conda 3.2 MB | noarch/r-reffreeewas-2.2-r43hc72bb7e_4.conda  7 months and 23 days ago 638 main
conda 3.2 MB | noarch/r-reffreeewas-2.2-r42hc72bb7e_3.conda  1 year and 8 months ago 1099 main
conda 3.2 MB | noarch/r-reffreeewas-2.2-r43hc72bb7e_3.conda  1 year and 8 months ago 1100 main
conda 3.3 MB | noarch/r-reffreeewas-2.2-r42hc72bb7e_2.tar.bz2  2 years and 4 months ago 1417 main
conda 3.3 MB | noarch/r-reffreeewas-2.2-r41hc72bb7e_2.tar.bz2  2 years and 4 months ago 1375 main
conda 3.3 MB | noarch/r-reffreeewas-2.2-r40hc72bb7e_1.tar.bz2  3 years and 9 months ago 2116 main
conda 3.3 MB | noarch/r-reffreeewas-2.2-r41hc72bb7e_1.tar.bz2  3 years and 9 months ago 2082 main
conda 3.3 MB | noarch/r-reffreeewas-2.2-r36h6115d3f_1.tar.bz2  4 years and 9 months ago 2936 main
conda 3.3 MB | noarch/r-reffreeewas-2.2-r40h6115d3f_1.tar.bz2  4 years and 9 months ago 2950 main
conda 3.3 MB | noarch/r-reffreeewas-2.2-r35h6115d3f_0.tar.bz2  4 years and 9 months ago 2923 main
conda 3.3 MB | noarch/r-reffreeewas-2.2-r36h6115d3f_0.tar.bz2  4 years and 9 months ago 2935 main

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