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Reference-free method for conducting EWAS while deconvoluting DNA methylation arising as mixtures of cell types. The older method (Houseman et al., 2014,<doi:10.1093/bioinformatics/btu029>) is similar to surrogate variable analysis (SVA and ISVA), except that it makes additional use of a biological mixture assumption. The newer method (Houseman et al., 2016, <doi:10.1186/s12859-016-1140-4>) is similar to non-negative matrix factorization, with additional constraints and additional utilities.

copied from cf-staging / r-reffreeewas
Type Size Name Uploaded Downloads Labels
conda 3.2 MB | noarch/r-reffreeewas-2.2-r44hc72bb7e_4.conda  8 months and 13 days ago 660 main
conda 3.2 MB | noarch/r-reffreeewas-2.2-r43hc72bb7e_4.conda  8 months and 13 days ago 672 main
conda 3.2 MB | noarch/r-reffreeewas-2.2-r42hc72bb7e_3.conda  1 year and 9 months ago 1129 main
conda 3.2 MB | noarch/r-reffreeewas-2.2-r43hc72bb7e_3.conda  1 year and 9 months ago 1130 main
conda 3.3 MB | noarch/r-reffreeewas-2.2-r42hc72bb7e_2.tar.bz2  2 years and 5 months ago 1447 main
conda 3.3 MB | noarch/r-reffreeewas-2.2-r41hc72bb7e_2.tar.bz2  2 years and 5 months ago 1404 main
conda 3.3 MB | noarch/r-reffreeewas-2.2-r40hc72bb7e_1.tar.bz2  3 years and 9 months ago 2148 main
conda 3.3 MB | noarch/r-reffreeewas-2.2-r41hc72bb7e_1.tar.bz2  3 years and 9 months ago 2113 main
conda 3.3 MB | noarch/r-reffreeewas-2.2-r36h6115d3f_1.tar.bz2  4 years and 10 months ago 2964 main
conda 3.3 MB | noarch/r-reffreeewas-2.2-r40h6115d3f_1.tar.bz2  4 years and 10 months ago 2981 main
conda 3.3 MB | noarch/r-reffreeewas-2.2-r35h6115d3f_0.tar.bz2  4 years and 10 months ago 2954 main
conda 3.3 MB | noarch/r-reffreeewas-2.2-r36h6115d3f_0.tar.bz2  4 years and 10 months ago 2959 main

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